UHGV-0211486

Genome information

Genome length 38,249 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9668

Prediction confidence Confident

Genome information
Genome ID	UHGV-0211486
vOTU ID	vOTU-066459
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS062427_a1_ct55792_vs1@Myoviridae__sp._ctOiw1
BioSample	SAMN00081451
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9668
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.1
Jumbo phage	No

Genome content
Genome length	38,249 bps
GC content	27.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.15%
Average CDS length	461.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211486_2	PHROG	phrog_4074	NA	unknown function
UHGV-0211486_2	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-0211486_2	eggNOG-mapper	1232430.CAVG010000115_gene1032	NA	NA
UHGV-0211486_9	PHROG	phrog_18984	NA	unknown function
UHGV-0211486_10	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0211486_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0211486_13	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0211486_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0211486_16	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-0211486_16	eggNOG-mapper	411902.CLOBOL_03884	HNH endonuclease	NA
UHGV-0211486_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0211486_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0211486_16	Structural annotation	NF008448	NA	NA
UHGV-0211486_18	PHROG	phrog_1066	NA	unknown function
UHGV-0211486_18	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0211486_18	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0211486_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211486_19	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0211486_19	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0211486_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0211486_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211486_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211486_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0211486_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211486_20	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-0211486_20	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0211486_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211486_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211486_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211486_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211486_21	KOfam	K06904	NA	NA
UHGV-0211486_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0211486_21	UniRef90	UniRef90_A0A7L6N4K9	HK97 family phage prohead protease	NA
UHGV-0211486_21	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0211486_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0211486_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0211486_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0211486_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0211486_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211486_22	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-0211486_22	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0211486_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211486_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211486_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211486_24	PHROG	phrog_5223	neck protein	connector
UHGV-0211486_24	UniRef90	UniRef90_UPI00189ABEFE	DNA-packaging protein	NA
UHGV-0211486_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0211486_25	eggNOG-mapper	202752.JL53_03765	head-tail adaptor	NA
UHGV-0211486_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0211486_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0211486_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0211486_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0211486_26	UniRef90	UniRef90_A0A0F4VPW6	NA	NA
UHGV-0211486_26	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0211486_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0211486_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0211486_27	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0211486_27	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0211486_28	PHROG	phrog_88	major tail protein	tail
UHGV-0211486_28	UniRef90	UniRef90_R9K3K8	Phi13 family phage major tail protein	NA
UHGV-0211486_28	eggNOG-mapper	1235792.C808_00091	phage major tail protein, phi13 family	NA
UHGV-0211486_28	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0211486_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0211486_28	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0211486_30	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0211486_30	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0211486_30	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0211486_30	eggNOG-mapper	411471.SUBVAR_05860	tail tape measure protein, TP901	NA
UHGV-0211486_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0211486_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0211486_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0211486_32	PHROG	phrog_13564	minor tail protein	tail
UHGV-0211486_32	UniRef90	UniRef90_R6EKZ3	Putative phage protein	NA
UHGV-0211486_32	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0211486_32	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0211486_33	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0211486_33	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0211486_33	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0211486_33	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-0211486_34	Structural annotation	PF20747	NA	NA
UHGV-0211486_35	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0211486_35	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0211486_39	eggNOG-mapper	1118055.CAGU01000028_gene104	NA	NA
UHGV-0211486_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0211486_42	PHROG	phrog_881	holin	lysis
UHGV-0211486_42	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0211486_42	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0211486_42	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0211486_42	Structural annotation	PF16938	NA	NA
UHGV-0211486_43	PHROG	phrog_29609	NA	unknown function
UHGV-0211486_43	UniRef90	UniRef90_R7FKF3	30S ribosomal protein S20	NA
UHGV-0211486_43	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0211486_43	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0211486_43	COG	COG2369	NA	NA
UHGV-0211486_43	Structural annotation	PF18825, COG2929	NA	NA
UHGV-0211486_44	PHROG	phrog_297	holin	lysis
UHGV-0211486_44	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0211486_44	Pfam	PF05257	CHAP domain	CHAP
UHGV-0211486_44	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0211486_44	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-0211486_45	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0211486_45	UniRef90	UniRef90_UPI00026C8333	AP2 domain-containing protein	NA
UHGV-0211486_45	eggNOG-mapper	748727.CLJU_c22370	NA	NA
UHGV-0211486_45	Structural annotation	PF00847	NA	NA
UHGV-0211486_52	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0211486_52	Structural annotation	PF09388	NA	NA
UHGV-0211486_54	KOfam	K14059	int; integrase	NA
UHGV-0211486_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0211486_54	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-0211486_54	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0211486_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0211486_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0211486_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0211486_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0211486_55	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0211486_55	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0211486_55	UniRef90	UniRef90_I0R777	Exonuclease	NA
UHGV-0211486_55	eggNOG-mapper	1095750.HMPREF9970_1687	EXOIII	NA
UHGV-0211486_55	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0211486_55	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0211486_55	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0211486_55	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0211486_55	Structural annotation	PF00929, MF_00045, NF004964, COG0847	NA	NA
UHGV-0211486_57	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0211486_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0211486_57	UniRef90	UniRef90_R7ITV8	Helix-turn-helix domain protein	NA
UHGV-0211486_57	eggNOG-mapper	596315.HMPREF0634_0379	PFAM Helix-turn-helix	NA
UHGV-0211486_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0211486_57	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0211486_57	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0211486_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0211486_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0211486_58	UniRef90	UniRef90_UPI001C381263	helix-turn-helix transcriptional regulator	NA
UHGV-0211486_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0211486_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0211486_59	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0211486_64	PHROG	phrog_7566	NA	unknown function
UHGV-0211486_64	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0211486_66	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0211486_66	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0211486_66	UniRef90	UniRef90_A0A1Q6K3H0	DnaB_2 domain-containing protein	NA
UHGV-0211486_66	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0211486_66	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0211486_66	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0211486_66	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0211486_66	Structural annotation	TIGR01714	NA	NA
UHGV-0211486_67	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0211486_67	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0211486_67	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0211486_67	eggNOG-mapper	123214.PERMA_1295	Participates in initiation and elongation during chromosome replication	NA
UHGV-0211486_67	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0211486_67	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0211486_67	COG	COG0305	Replicative DNA helicase	NA
UHGV-0211486_67	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0211486_70	eggNOG-mapper	1211814.CAPG01000074_gene3476	NA	NA
UHGV-0211486_70	Structural annotation	PF15188	NA	NA