UHGV-0211973

Genome information

Genome length 26,381 bps

CDS count 31

Completeness 72.34% (medium-quality)

geNomad score 0.9332

Prediction confidence Confident

Genome information
Genome ID	UHGV-0211973
vOTU ID	vOTU-029996
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252271_a1_ct222806_vs1@Siphoviridae__sp._ct4wg1
BioSample	SAMN11252271
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9332
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.01
Jumbo phage	No

Genome content
Genome length	26,381 bps
GC content	41.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.19%
Average CDS length	803.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211973_1	PHROG	phrog_9452	terminase small subunit	head and packaging
UHGV-0211973_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211973_2	UniRef90	UniRef90_A0A7H9CKP4	Phage portal protein, HK97 family	NA
UHGV-0211973_2	eggNOG-mapper	1244083.CSUNSWCD_1489	Phage portal protein	NA
UHGV-0211973_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211973_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211973_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211973_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211973_4	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0211973_4	UniRef90	UniRef90_UPI001475323C	HK97 family phage prohead protease	NA
UHGV-0211973_4	eggNOG-mapper	1244083.CSUNSWCD_1490	NA	NA
UHGV-0211973_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211973_5	UniRef90	UniRef90_A0A7H9CJB0	Phage major capsid protein, HK97 family	NA
UHGV-0211973_5	eggNOG-mapper	1244083.CSUNSWCD_1491	Phage capsid family	NA
UHGV-0211973_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211973_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211973_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0211973_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211973_6	PHROG	phrog_10225	NA	unknown function
UHGV-0211973_6	eggNOG-mapper	1244083.CSUNSWCD_1496	NA	NA
UHGV-0211973_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0211973_8	UniRef90	UniRef90_A0A7H9CKF4	Phage protein, HK97 gp10 family	NA
UHGV-0211973_8	eggNOG-mapper	335797.C7BGH3_9CAUD	exonuclease activity	NA
UHGV-0211973_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0211973_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0211973_9	PHROG	phrog_10093	tail length tape measure protein	tail
UHGV-0211973_9	UniRef90	UniRef90_A0A7H9CHZ8	Phage tail tape measure protein	NA
UHGV-0211973_9	eggNOG-mapper	983328.AFGH01000033_gene777	tape measure	NA
UHGV-0211973_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0211973_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0211973_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0211973_10	PHROG	phrog_3811	NA	unknown function
UHGV-0211973_10	UniRef90	UniRef90_A0A7H9CIF8	NA	NA
UHGV-0211973_10	Pfam	PF14301	NA	DUF4376
UHGV-0211973_11	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0211973_11	UniRef90	UniRef90_A0A7H9CI00	NA	NA
UHGV-0211973_11	eggNOG-mapper	306263.Cla_0843	NA	NA
UHGV-0211973_11	Pfam	PF07087	NA	DUF1353
UHGV-0211973_11	Structural annotation	PF07087	NA	NA
UHGV-0211973_14	PHROG	phrog_33534	NA	unknown function
UHGV-0211973_14	UniRef90	UniRef90_A0A7H9CHZ1	Putative phage-related lysozyme	NA
UHGV-0211973_14	eggNOG-mapper	553220.CAMGR0001_1663	Phage lysozyme	NA
UHGV-0211973_14	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0211973_14	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0211973_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0211973_15	UniRef90	UniRef90_A0A7H9CKL8	Bacteriophage head to tail connecting protein	NA
UHGV-0211973_15	eggNOG-mapper	1487921.DP68_11335	Phage gp6-like head-tail connector protein	NA
UHGV-0211973_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0211973_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0211973_16	KOfam	K22111	nanS; 9-O-acetyl-N-acetylneuraminic acid deacetylase	NA
UHGV-0211973_16	UniRef90	UniRef90_A0A7H9CLQ6	Carbohydrate esterase, sialic acid-specific acetylesterase	NA
UHGV-0211973_16	eggNOG-mapper	155864.EDL933_2297	Corresponds to locus_tag	NA
UHGV-0211973_16	Pfam	PF03629	Carbohydrate esterase, sialic acid-specific acetylesterase	SASA
UHGV-0211973_16	COG	COG5515	NA	NA
UHGV-0211973_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0211973_18	PHROG	phrog_6278	NA	unknown function
UHGV-0211973_18	UniRef90	UniRef90_A0A4Z0B3E2	Carbohydrate-binding protein	NA
UHGV-0211973_18	eggNOG-mapper	279238.Saro_0661	chitinase	NA
UHGV-0211973_18	COG	COG3979	Chitodextrinase	NA
UHGV-0211973_18	Structural annotation	PF05939, PF14958, PF02839, TIGR01633, COG4718	NA	NA
UHGV-0211973_19	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-0211973_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211973_20	UniRef90	UniRef90_A0A7H9CI09	Phage terminase-like protein, large subunit	NA
UHGV-0211973_20	eggNOG-mapper	1244083.CSUNSWCD_1486	Phage Terminase	NA
UHGV-0211973_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0211973_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211973_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211973_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0211973_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0211973_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0211973_21	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0211973_21	eggNOG-mapper	1688.BCUN_0619	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0211973_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0211973_21	Structural annotation	NF008152, COG0338	NA	NA
UHGV-0211973_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0211973_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0211973_26	UniRef90	UniRef90_A0A7H9CIG1	Single-stranded DNA-binding protein	NA
UHGV-0211973_26	eggNOG-mapper	749927.AMED_0360	Single-stranded DNA-binding protein	NA
UHGV-0211973_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0211973_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0211973_26	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0211973_28	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0211973_28	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0211973_28	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0211973_30	UniRef90	UniRef90_A0A7H9CI18	Single-stranded DNA-binding protein	NA