UHGV-0212085

Genome information

Genome length 42,235 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0212085
vOTU ID	vOTU-064598
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10080890_a1_ct18295_vs1@linear@Siphoviridae__sp._ctM3l1
BioSample	SAMN10080890
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.28
Jumbo phage	No

Genome content
Genome length	42,235 bps
GC content	50.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.86%
Average CDS length	624.82 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0212085_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0212085_1	UniRef90	UniRef90_UPI001E5E444D	phage portal protein	NA
UHGV-0212085_1	eggNOG-mapper	1307436.PBF_22063	Phage portal protein	NA
UHGV-0212085_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0212085_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0212085_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0212085_2	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0212085_2	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0212085_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0212085_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0212085_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0212085_3	PHROG	phrog_13845	NA	unknown function
UHGV-0212085_3	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0212085_3	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0212085_3	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0212085_4	PHROG	phrog_13845	NA	unknown function
UHGV-0212085_4	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0212085_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0212085_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0212085_5	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0212085_5	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0212085_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0212085_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0212085_5	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0212085_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0212085_6	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0212085_6	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0212085_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0212085_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0212085_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0212085_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0212085_7	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0212085_7	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0212085_7	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0212085_7	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0212085_7	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0212085_7	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0212085_7	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0212085_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0212085_8	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0212085_8	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0212085_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0212085_8	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0212085_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0212085_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0212085_8	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0212085_9	PHROG	phrog_749	NA	unknown function
UHGV-0212085_9	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0212085_10	PHROG	phrog_19734	NA	unknown function
UHGV-0212085_10	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0212085_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0212085_11	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0212085_11	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0212085_12	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0212085_12	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0212085_12	Structural annotation	TIGR01725	NA	NA
UHGV-0212085_13	PHROG	phrog_88	major tail protein	tail
UHGV-0212085_13	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0212085_13	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0212085_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0212085_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0212085_16	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0212085_16	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0212085_16	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0212085_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0212085_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0212085_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0212085_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0212085_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0212085_17	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0212085_17	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-0212085_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0212085_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0212085_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0212085_18	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0212085_18	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0212085_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0212085_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0212085_18	COG	COG4926	Phage-related protein	NA
UHGV-0212085_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0212085_19	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0212085_19	COG	COG5434	Polygalacturonase	NA
UHGV-0212085_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0212085_20	PHROG	phrog_291	endolysin	lysis
UHGV-0212085_20	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0212085_20	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0212085_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0212085_20	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0212085_20	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0212085_21	PHROG	phrog_4105	NA	unknown function
UHGV-0212085_21	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0212085_22	PHROG	phrog_263	holin	lysis
UHGV-0212085_22	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-0212085_22	eggNOG-mapper	411483.FAEPRAA2165_00003	SPP1 phage holin	NA
UHGV-0212085_22	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0212085_22	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0212085_22	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0212085_25	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0212085_25	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0212085_29	PHROG	phrog_22984	NA	unknown function
UHGV-0212085_30	PHROG	phrog_16490	NA	unknown function
UHGV-0212085_30	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0212085_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0212085_32	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0212085_33	KOfam	K14059	int; integrase	NA
UHGV-0212085_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0212085_33	UniRef90	UniRef90_A0A7U9IE49	Site-specific recombinase, phage integrase family	NA
UHGV-0212085_33	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0212085_33	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0212085_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0212085_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0212085_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0212085_34	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0212085_34	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0212085_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0212085_34	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0212085_39	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0212085_41	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0212085_41	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0212085_41	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0212085_42	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0212085_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0212085_42	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0212085_47	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0212085_47	PHROG	phrog_200	lipoprotein	other
UHGV-0212085_47	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0212085_47	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0212085_47	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0212085_47	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0212085_47	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0212085_49	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0212085_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0212085_50	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0212085_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0212085_51	Pfam	PF04448	NA	DUF551
UHGV-0212085_51	Structural annotation	NF041588	NA	NA
UHGV-0212085_52	PHROG	phrog_7566	NA	unknown function
UHGV-0212085_52	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0212085_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0212085_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0212085_53	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0212085_53	eggNOG-mapper	718252.FP2_05080	Single-stranded DNA-binding protein	NA
UHGV-0212085_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0212085_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0212085_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0212085_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0212085_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0212085_54	PHROG	phrog_6969	NA	unknown function
UHGV-0212085_54	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0212085_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0212085_54	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0212085_55	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0212085_55	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0212085_55	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0212085_55	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0212085_55	Pfam	PF13614	AAA domain	AAA_31
UHGV-0212085_55	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0212085_55	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0212085_56	PHROG	phrog_35094	NA	unknown function
UHGV-0212085_56	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0212085_57	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0212085_57	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0212085_57	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0212085_57	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0212085_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0212085_57	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0212085_57	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0212085_58	PHROG	phrog_14105	NA	unknown function
UHGV-0212085_58	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0212085_58	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0212085_58	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0212085_59	Structural annotation	PF04545	NA	NA
UHGV-0212085_61	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0212085_61	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0212085_61	UniRef90	UniRef90_UPI0011DC86C4	N-6 DNA methylase	NA
UHGV-0212085_61	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0212085_61	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0212085_61	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0212085_61	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0212085_61	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA