UHGV-0212522

Genome information

Genome length 46,021 bps

CDS count 69

Completeness 99.37% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0212522
vOTU ID	vOTU-060388
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN10080933_a1_ct10365_vs1@linear@Myoviridae__sp._ctyQl1
BioSample	SAMN10080933
Country	Cameroon
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.88
Jumbo phage	No

Genome content
Genome length	46,021 bps
GC content	46.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	87.98%
Average CDS length	590.87 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0212522_1	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0212522_1	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0212522_1	eggNOG-mapper	1158614.I592_02266	Phage gp6-like head-tail connector protein	NA
UHGV-0212522_1	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0212522_1	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0212522_1	Structural annotation	TIGR01560	NA	NA
UHGV-0212522_2	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0212522_4	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0212522_5	PHROG	phrog_158	major tail protein	tail
UHGV-0212522_5	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0212522_5	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0212522_5	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0212522_6	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0212522_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0212522_8	eggNOG-mapper	397288.C806_01518	Phage-related minor tail protein	NA
UHGV-0212522_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0212522_9	PHROG	phrog_1194	NA	unknown function
UHGV-0212522_9	eggNOG-mapper	445972.ANACOL_01864	NA	NA
UHGV-0212522_9	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0212522_10	PHROG	phrog_18190	NA	unknown function
UHGV-0212522_10	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0212522_10	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0212522_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0212522_13	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0212522_13	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0212522_13	UniRef90	UniRef90_A0A2V2FTH8	Peptidase M23	NA
UHGV-0212522_13	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-0212522_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0212522_13	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0212522_14	PHROG	phrog_32509	NA	unknown function
UHGV-0212522_14	eggNOG-mapper	1235813.JCM10003_1400	Leucine-rich repeat (LRR) protein	NA
UHGV-0212522_14	Pfam	PF15892	BNR repeat-containing family member	BNR_4
UHGV-0212522_14	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0212522_15	PHROG	phrog_1129	holin	lysis
UHGV-0212522_15	UniRef90	UniRef90_A0A2N2CPW4	Enolase	NA
UHGV-0212522_15	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0212522_15	Structural annotation	PF06946	NA	NA
UHGV-0212522_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0212522_19	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0212522_20	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0212522_21	PHROG	phrog_16490	NA	unknown function
UHGV-0212522_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0212522_23	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0212522_24	eggNOG-mapper	1120956.JHZK01000007_gene2862	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0212522_24	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0212522_24	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0212522_27	eggNOG-mapper	717772.THIAE_06705	HicB family	NA
UHGV-0212522_27	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0212522_27	Structural annotation	PF16225, TIGR04550, COG4226	NA	NA
UHGV-0212522_28	PHROG	phrog_8060	NA	unknown function
UHGV-0212522_28	UniRef90	UniRef90_UPI000EBBA323	HNH endonuclease	NA
UHGV-0212522_28	eggNOG-mapper	665942.HMPREF1022_00974	HNH nucleases	NA
UHGV-0212522_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0212522_29	UniRef90	UniRef90_UPI001C01DFED	conserved phage C-terminal domain-containing protein	NA
UHGV-0212522_29	eggNOG-mapper	1415775.U729_2491	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0212522_29	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0212522_32	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0212522_32	UniRef90	UniRef90_UPI00058C5410	PD-(D/E)XK nuclease family protein	NA
UHGV-0212522_32	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0212522_32	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0212522_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0212522_34	eggNOG-mapper	864702.OsccyDRAFT_0687	NA	NA
UHGV-0212522_35	eggNOG-mapper	1449126.JQKL01000032_gene1263	NA	NA
UHGV-0212522_35	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0212522_38	Structural annotation	PF00436, MF_00984, NF005242, COG2965	NA	NA
UHGV-0212522_40	PHROG	phrog_16304	NA	unknown function
UHGV-0212522_40	eggNOG-mapper	768706.Desor_0679	NA	NA
UHGV-0212522_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0212522_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0212522_43	UniRef90	UniRef90_A0A316NVS3	DNA helicase	NA
UHGV-0212522_43	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0212522_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0212522_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0212522_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0212522_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0212522_44	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0212522_44	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0212522_44	eggNOG-mapper	1410650.JHWL01000003_gene2849	NA	NA
UHGV-0212522_48	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0212522_48	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0212522_48	UniRef90	UniRef90_UPI0006961AD7	AAA family ATPase	NA
UHGV-0212522_48	eggNOG-mapper	402612.FP2177	AAA domain (dynein-related subfamily)	NA
UHGV-0212522_48	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0212522_48	COG	COG0714	MoxR-like ATPase	NA
UHGV-0212522_48	Structural annotation	PF07728, MF_03121, TIGR02640, COG0714	NA	NA
UHGV-0212522_49	PHROG	phrog_1909	NA	unknown function
UHGV-0212522_49	Structural annotation	TIGR01651, COG4547	NA	NA
UHGV-0212522_52	Structural annotation	PF21662, MF_00683, NF010673	NA	NA
UHGV-0212522_57	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0212522_57	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0212522_57	UniRef90	UniRef90_A0A2A7ALC5	Flavin-dependent thymidylate synthase	NA
UHGV-0212522_57	eggNOG-mapper	657322.FPR_23400	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0212522_57	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0212522_57	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0212522_57	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0212522_57	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0212522_57	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0212522_58	PHROG	phrog_236	nucleotide kinase	other
UHGV-0212522_58	UniRef90	UniRef90_A0A7Y4YH51	NA	NA
UHGV-0212522_58	eggNOG-mapper	397290.C810_01372	NA	NA
UHGV-0212522_58	Pfam	PF11753	NA	DUF3310
UHGV-0212522_60	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0212522_60	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0212522_60	UniRef90	UniRef90_A0A6A2VG41	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0212522_60	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0212522_60	Pfam	PF00692	dUTPase	dUTPase
UHGV-0212522_60	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0212522_60	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0212522_60	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0212522_63	Structural annotation	PF17613, COG2139	NA	NA
UHGV-0212522_64	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0212522_64	UniRef90	UniRef90_UPI00083559E8	NA	NA
UHGV-0212522_64	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-0212522_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0212522_64	Structural annotation	PF13463, MF_01909, NF040642, COG1846	NA	NA
UHGV-0212522_65	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0212522_65	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0212522_65	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0212522_65	COG	COG5410	NA	NA
UHGV-0212522_65	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0212522_67	PHROG	phrog_64	portal protein	head and packaging
UHGV-0212522_67	UniRef90	UniRef90_UPI001D06C00B	phage portal protein	NA
UHGV-0212522_67	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0212522_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0212522_67	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0212522_69	PHROG	phrog_247	major head protein	head and packaging
UHGV-0212522_69	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0212522_69	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0212522_69	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA