UHGV-0213252

Genome information

Genome length 36,087 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0213252
vOTU ID	vOTU-049001
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN11252284_a1_ct34028@circular@Siphoviridae__sp._ctL4v028
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.58
Jumbo phage	No

Genome content
Genome length	36,087 bps
GC content	50.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	95.08%
Average CDS length	508.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0213252_8	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0213252_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0213252_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0213252_23	UniRef90	UniRef90_A0A843CWV8	Site-specific integrase	NA
UHGV-0213252_23	eggNOG-mapper	342949.PNA2_0424	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules	NA
UHGV-0213252_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0213252_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0213252_23	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0213252_32	Pfam	PF11611	NA	DUF4352
UHGV-0213252_34	PHROG	phrog_16490	NA	unknown function
UHGV-0213252_34	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0213252_34	eggNOG-mapper	445970.ALIPUT_01632	NA	NA
UHGV-0213252_38	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0213252_39	UniRef90	UniRef90_A0A415L408	Ig-like_bact domain-containing protein	NA
UHGV-0213252_39	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-0213252_39	Pfam	PF13754	NA	Big_3_4
UHGV-0213252_39	Structural annotation	PF13754	NA	NA
UHGV-0213252_40	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0213252_40	PHROG	phrog_11157	NA	unknown function
UHGV-0213252_40	UniRef90	UniRef90_A0A415L562	Big_13 domain-containing protein	NA
UHGV-0213252_40	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0213252_40	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0213252_40	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0213252_40	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0213252_40	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0213252_41	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0213252_41	eggNOG-mapper	1410626.JHXB01000004_gene213	NA	NA
UHGV-0213252_41	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0213252_41	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-0213252_41	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0213252_41	COG	COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	NA
UHGV-0213252_42	PHROG	phrog_13879	NA	unknown function
UHGV-0213252_43	PHROG	phrog_1194	NA	unknown function
UHGV-0213252_43	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0213252_43	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0213252_43	Pfam	PF20458	NA	DUF6711
UHGV-0213252_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0213252_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0213252_44	COG	COG1511	NA	NA
UHGV-0213252_47	PHROG	phrog_158	major tail protein	tail
UHGV-0213252_47	eggNOG-mapper	1215915.BN193_00175	domain protein	NA
UHGV-0213252_47	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0213252_47	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0213252_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0213252_49	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0213252_49	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0213252_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0213252_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0213252_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0213252_51	UniRef90	UniRef90_UPI001788EF9D	phage head-tail connector protein	NA
UHGV-0213252_51	eggNOG-mapper	1158612.I580_01914	NA	NA
UHGV-0213252_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0213252_51	Structural annotation	TIGR01560	NA	NA
UHGV-0213252_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-0213252_52	UniRef90	UniRef90_F5RMR4	Lj928 prophage protein	NA
UHGV-0213252_52	eggNOG-mapper	1415774.U728_1665	NA	NA
UHGV-0213252_52	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0213252_53	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0213252_53	UniRef90	UniRef90_A0A843IDC0	NA	NA
UHGV-0213252_53	Pfam	PF14265	NA	DUF4355
UHGV-0213252_53	Structural annotation	PF14265	NA	NA
UHGV-0213252_54	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0213252_54	UniRef90	UniRef90_U4Q8H6	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0213252_54	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0213252_54	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0213252_54	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0213252_54	COG	COG2369	NA	NA
UHGV-0213252_54	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0213252_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0213252_55	UniRef90	UniRef90_A0A843EA50	Phage portal protein (Fragment)	NA
UHGV-0213252_55	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0213252_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0213252_55	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0213252_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0213252_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0213252_56	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0213252_56	UniRef90	UniRef90_A0A843IGX0	Terminase family protein	NA
UHGV-0213252_56	eggNOG-mapper	431943.CKL_1870	phage terminase, large subunit, PBSX family	NA
UHGV-0213252_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0213252_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0213252_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0213252_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0213252_57	PHROG	phrog_2412	NA	unknown function
UHGV-0213252_57	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0213252_57	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0213252_57	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0213252_58	PHROG	phrog_16945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0213252_58	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0213252_59	PHROG	phrog_5935	NA	unknown function
UHGV-0213252_59	UniRef90	UniRef90_A0A7C5NIC0	Peroxide stress protein YaaA	NA
UHGV-0213252_59	eggNOG-mapper	1141106.CAIB01000118_gene939	NA	NA
UHGV-0213252_59	Pfam	PF21818	NA	DUF6884
UHGV-0213252_59	Structural annotation	PF21818, MF_00652, NF002542, COG3022	NA	NA
UHGV-0213252_60	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0213252_60	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-0213252_60	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0213252_60	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0213252_61	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0213252_61	PHROG	phrog_4899	NA	unknown function
UHGV-0213252_61	UniRef90	UniRef90_A0A172RZ86	Probable queuosine precursor transporter	NA
UHGV-0213252_61	eggNOG-mapper	469378.Ccur_12650	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0213252_61	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0213252_61	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0213252_61	COG	COG1738	NA	NA
UHGV-0213252_61	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0213252_61	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0213252_62	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0213252_62	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0213252_62	UniRef90	UniRef90_A0A254RRT5	Chromosome partitioning protein ParB	NA
UHGV-0213252_62	eggNOG-mapper	796940.HMPREF9628_00151	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0213252_62	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0213252_62	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0213252_62	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0213252_62	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA