UHGV-0213608

Genome information

Genome length 30,837 bps

CDS count 45

Completeness 79.14% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0213608
vOTU ID	vOTU-028823
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781777_a1_ct15496_vs1@Myoviridae__sp._ctxlU1
BioSample	SAMN09781777
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.65
Jumbo phage	No

Genome content
Genome length	30,837 bps
GC content	45.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.91%
Average CDS length	631.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0213608_2	KOfam	K16629	COL21A; collagen type XXI alpha	NA
UHGV-0213608_2	PHROG	phrog_38044	NA	unknown function
UHGV-0213608_2	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0213608_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0213608_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0213608_3	PHROG	phrog_1066	NA	unknown function
UHGV-0213608_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0213608_4	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0213608_4	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0213608_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0213608_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0213608_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0213608_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0213608_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0213608_5	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0213608_5	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0213608_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0213608_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0213608_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0213608_6	KOfam	K06904	NA	NA
UHGV-0213608_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0213608_6	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0213608_6	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0213608_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0213608_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0213608_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0213608_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0213608_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0213608_7	UniRef90	UniRef90_A0A415G894	Phage major capsid protein	NA
UHGV-0213608_7	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0213608_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0213608_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0213608_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0213608_7	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0213608_9	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0213608_9	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0213608_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0213608_10	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0213608_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0213608_11	Structural annotation	TIGR01725	NA	NA
UHGV-0213608_12	Structural annotation	PF05657	NA	NA
UHGV-0213608_13	PHROG	phrog_88	major tail protein	tail
UHGV-0213608_13	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0213608_13	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0213608_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0213608_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0213608_16	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0213608_16	PHROG	phrog_5218	NA	unknown function
UHGV-0213608_16	UniRef90	UniRef90_A0A415G8B3	PhageMin_Tail domain-containing protein	NA
UHGV-0213608_16	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0213608_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0213608_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0213608_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0213608_17	PHROG	phrog_36410	NA	unknown function
UHGV-0213608_17	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0213608_17	eggNOG-mapper	755731.Clo1100_0556	Phage tail protein	NA
UHGV-0213608_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0213608_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0213608_17	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0213608_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0213608_18	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0213608_18	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0213608_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0213608_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0213608_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-0213608_19	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0213608_19	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0213608_20	eggNOG-mapper	97139.C824_03109	NA	NA
UHGV-0213608_21	PHROG	phrog_13890	NA	unknown function
UHGV-0213608_21	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0213608_21	eggNOG-mapper	411902.CLOBOL_03783	NA	NA
UHGV-0213608_21	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0213608_22	KOfam	K14059	int; integrase	NA
UHGV-0213608_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0213608_22	UniRef90	UniRef90_A0A1Y4FAV6	Integrase	NA
UHGV-0213608_22	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0213608_22	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0213608_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0213608_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0213608_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0213608_22	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0213608_23	PHROG	phrog_1847	NA	unknown function
UHGV-0213608_23	UniRef90	UniRef90_A0A4V0Z837	T5orf172 domain-containing protein	NA
UHGV-0213608_23	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0213608_23	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0213608_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0213608_23	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0213608_24	PHROG	phrog_87	metallo-protease	other
UHGV-0213608_24	UniRef90	UniRef90_A0A1U7M6N8	Peptidase_M78 domain-containing protein	NA
UHGV-0213608_24	eggNOG-mapper	857293.CAAU_0764	Zn peptidase	NA
UHGV-0213608_24	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0213608_24	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0213608_24	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0213608_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0213608_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0213608_25	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0213608_25	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0213608_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0213608_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0213608_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0213608_25	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0213608_26	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-0213608_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0213608_29	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0213608_29	UniRef90	UniRef90_UPI001C3A6F66	NA	NA
UHGV-0213608_29	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0213608_29	Structural annotation	PF06573	NA	NA
UHGV-0213608_31	PHROG	phrog_585	NA	unknown function
UHGV-0213608_31	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0213608_31	eggNOG-mapper	543734.LCABL_13080	NA	NA
UHGV-0213608_31	Pfam	PF10711	NA	DUF2513
UHGV-0213608_31	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0213608_37	PHROG	phrog_5070	NA	unknown function
UHGV-0213608_37	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0213608_37	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0213608_37	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0213608_37	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0213608_37	Structural annotation	NF040481	NA	NA
UHGV-0213608_39	PHROG	phrog_6058	NA	unknown function
UHGV-0213608_39	UniRef90	UniRef90_A0A6S6QQH8	HTH cro/C1-type domain-containing protein	NA
UHGV-0213608_39	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0213608_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0213608_39	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0213608_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0213608_41	UniRef90	UniRef90_UPI0015EBC975	siphovirus Gp157 family protein	NA
UHGV-0213608_41	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0213608_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0213608_41	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0213608_42	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0213608_43	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0213608_43	UniRef90	UniRef90_UPI001E617172	ATP-binding protein	NA
UHGV-0213608_43	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0213608_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-0213608_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0213608_44	PHROG	phrog_18107	NA	unknown function
UHGV-0213608_44	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-0213608_44	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0213608_44	Structural annotation	PF05037	NA	NA
UHGV-0213608_45	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0213608_45	UniRef90	UniRef90_UPI0015711E37	phage/plasmid primase, P4 family	NA
UHGV-0213608_45	eggNOG-mapper	411470.RUMGNA_00901	Phage plasmid primase, P4 family	NA
UHGV-0213608_45	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0213608_45	Pfam	PF19263	NA	DUF5906
UHGV-0213608_45	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0213608_45	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0213608_45	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0213608_45	Structural annotation	PF19263, PF08706, PF02257, MF_04000, TIGR01613, COG3378	NA	NA