UHGV-0214457

Genome information

vOTU vOTU-001905

Genome length 44,781 bps

CDS count 83

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0214457
vOTU ID	vOTU-001905
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR10479807_141_12366_round347~217377
BioSample	SAMN05414897
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.05
Jumbo phage	No

Genome content
Genome length	44,781 bps
GC content	40.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	90.97%
Average CDS length	494.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0214457_1	PHROG	phrog_3502	NA	unknown function
UHGV-0214457_1	UniRef90	UniRef90_A0A3E2U401	LexA_DNA_bind domain-containing protein	NA
UHGV-0214457_1	eggNOG-mapper	911104.AEKT01000020_gene1791	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0214457_1	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0214457_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0214457_1	Structural annotation	PF01726, MF_00732, TIGR00738, COG1959	NA	NA
UHGV-0214457_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0214457_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0214457_2	UniRef90	UniRef90_A0A8B2X5V8	IstB_IS21 domain-containing protein	NA
UHGV-0214457_2	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0214457_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0214457_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0214457_2	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0214457_3	PHROG	phrog_16304	NA	unknown function
UHGV-0214457_3	UniRef90	UniRef90_A0A8B2X4T7	NA	NA
UHGV-0214457_3	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0214457_3	Pfam	PF19808	NA	DUF6291
UHGV-0214457_3	Structural annotation	PF19808	NA	NA
UHGV-0214457_4	PHROG	phrog_2113	NA	unknown function
UHGV-0214457_4	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0214457_6	PHROG	phrog_398	NA	unknown function
UHGV-0214457_6	UniRef90	UniRef90_UPI0011780B2F	putative HNHc nuclease	NA
UHGV-0214457_6	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0214457_6	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0214457_6	Structural annotation	PF16784	NA	NA
UHGV-0214457_7	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0214457_7	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0214457_7	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0214457_8	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0214457_8	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-0214457_8	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0214457_8	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0214457_8	Structural annotation	PF05565	NA	NA
UHGV-0214457_15	PHROG	phrog_15198	NA	unknown function
UHGV-0214457_15	UniRef90	UniRef90_A0A1I0GL62	NA	NA
UHGV-0214457_15	Pfam	PF04448	NA	DUF551
UHGV-0214457_16	UniRef90	UniRef90_A0A2Z4QA14	Immunity protein 58	NA
UHGV-0214457_16	AcrCatalog	cluster_17974	NA	NA
UHGV-0214457_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0214457_20	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0214457_20	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-0214457_20	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0214457_20	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0214457_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0214457_20	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0214457_20	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0214457_21	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0214457_21	UniRef90	UniRef90_A0A0U5P983	Helix-turn-helix domain protein	NA
UHGV-0214457_21	eggNOG-mapper	330396.A8ATD0_9CAUD	sequence-specific DNA binding	NA
UHGV-0214457_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0214457_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0214457_22	UniRef90	UniRef90_A0A0U5PIE9	HTH cro/C1-type domain-containing protein	NA
UHGV-0214457_22	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0214457_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0214457_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0214457_22	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0214457_23	PHROG	phrog_20886	NA	unknown function
UHGV-0214457_23	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0214457_23	Structural annotation	PF06114	NA	NA
UHGV-0214457_24	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0214457_24	UniRef90	UniRef90_UPI0013F64234	NA	NA
UHGV-0214457_24	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-0214457_24	Pfam	PF12978	NA	DUF3862
UHGV-0214457_24	Structural annotation	PF12978, PF20794, MF_00925, NF008423, COG4687, COG2913	NA	NA
UHGV-0214457_25	KOfam	K14059	int; integrase	NA
UHGV-0214457_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0214457_25	UniRef90	UniRef90_UPI001D155F20	tyrosine-type recombinase/integrase	NA
UHGV-0214457_25	eggNOG-mapper	1304866.K413DRAFT_3002	Belongs to the 'phage' integrase family	NA
UHGV-0214457_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0214457_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0214457_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0214457_27	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0214457_27	PHROG	phrog_2649	endolysin	lysis
UHGV-0214457_27	UniRef90	UniRef90_R0BKC0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0214457_27	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0214457_27	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0214457_27	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0214457_27	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0214457_28	UniRef90	UniRef90_A0A352P5F4	XkdX family protein	NA
UHGV-0214457_28	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0214457_29	PHROG	phrog_12931	NA	unknown function
UHGV-0214457_31	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0214457_31	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0214457_31	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0214457_32	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0214457_32	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0214457_33	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0214457_34	PHROG	phrog_18725	NA	unknown function
UHGV-0214457_34	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0214457_35	PHROG	phrog_32744	NA	unknown function
UHGV-0214457_35	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0214457_35	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0214457_36	PHROG	phrog_1194	NA	unknown function
UHGV-0214457_36	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0214457_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0214457_37	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-0214457_37	PHROG	phrog_37543	NA	unknown function
UHGV-0214457_37	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0214457_37	eggNOG-mapper	1432847.V5USK5_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0214457_37	Structural annotation	PF11172	NA	NA
UHGV-0214457_38	PHROG	phrog_706	NA	unknown function
UHGV-0214457_38	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0214457_38	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0214457_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0214457_38	Structural annotation	PF06854	NA	NA
UHGV-0214457_39	PHROG	phrog_11299	NA	unknown function
UHGV-0214457_39	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0214457_39	Structural annotation	PF10666	NA	NA
UHGV-0214457_40	PHROG	phrog_3099	NA	unknown function
UHGV-0214457_40	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0214457_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0214457_41	PHROG	phrog_3266	tail completion	connector
UHGV-0214457_41	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0214457_41	Structural annotation	PF12691	NA	NA
UHGV-0214457_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0214457_42	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0214457_42	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0214457_42	Structural annotation	PF11114	NA	NA
UHGV-0214457_43	PHROG	phrog_3366	NA	unknown function
UHGV-0214457_43	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0214457_43	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0214457_44	PHROG	phrog_1129	holin	lysis
UHGV-0214457_44	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0214457_44	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0214457_44	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0214457_44	Structural annotation	PF06946	NA	NA
UHGV-0214457_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0214457_45	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0214457_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0214457_46	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0214457_46	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0214457_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0214457_46	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0214457_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0214457_47	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0214457_47	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0214457_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0214457_48	PHROG	phrog_28802	NA	unknown function
UHGV-0214457_48	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0214457_49	PHROG	phrog_20016	NA	unknown function
UHGV-0214457_49	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0214457_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0214457_51	PHROG	phrog_16490	NA	unknown function
UHGV-0214457_51	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0214457_52	PHROG	phrog_22984	NA	unknown function
UHGV-0214457_53	PHROG	phrog_21718	NA	unknown function
UHGV-0214457_53	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0214457_55	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0214457_55	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0214457_55	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0214457_56	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0214457_56	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0214457_57	PHROG	phrog_3754	NA	unknown function
UHGV-0214457_57	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0214457_58	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0214457_58	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0214457_58	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0214457_58	COG	COG2369	NA	NA
UHGV-0214457_59	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0214457_59	UniRef90	UniRef90_UPI001D0ED280	AP2 domain-containing protein	NA
UHGV-0214457_59	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0214457_59	Structural annotation	PF00847, PF18115	NA	NA
UHGV-0214457_60	UniRef90	UniRef90_A0A5J5HFE5	Ribbon-helix-helix domain-containing protein	NA
UHGV-0214457_60	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0214457_61	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0214457_61	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0214457_61	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0214457_61	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0214457_61	COG	COG2369	NA	NA
UHGV-0214457_61	Structural annotation	PF06152	NA	NA
UHGV-0214457_62	PHROG	phrog_533	portal protein	head and packaging
UHGV-0214457_62	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0214457_62	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0214457_62	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0214457_64	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0214457_64	UniRef90	UniRef90_A0A3E2U4F6	AP2 domain-containing protein	NA
UHGV-0214457_64	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0214457_64	Pfam	PF00847	AP2 domain	AP2
UHGV-0214457_64	Structural annotation	PF00847	NA	NA
UHGV-0214457_65	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0214457_65	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0214457_65	UniRef90	UniRef90_A0A3E2U4P7	PBSX family phage terminase large subunit	NA
UHGV-0214457_65	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0214457_65	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0214457_65	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0214457_65	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0214457_65	COG	COG1783	Phage terminase large subunit	NA
UHGV-0214457_65	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0214457_66	UniRef90	UniRef90_A0A3E2U5Z1	Helix-turn-helix domain-containing protein	NA
UHGV-0214457_66	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0214457_66	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0214457_66	Structural annotation	PF13542	NA	NA
UHGV-0214457_69	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0214457_69	AcrCatalog	cluster_11670	NA	NA
UHGV-0214457_70	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0214457_70	PHROG	phrog_1	integrase	integration and excision
UHGV-0214457_70	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-0214457_70	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0214457_70	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0214457_70	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0214457_70	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0214457_70	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0214457_72	PHROG	phrog_8684	NA	unknown function
UHGV-0214457_72	UniRef90	UniRef90_G5HEN9	YopX domain-containing protein	NA
UHGV-0214457_72	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0214457_72	Pfam	PF09643	YopX protein	YopX
UHGV-0214457_72	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0214457_73	PHROG	phrog_17260	NA	unknown function
UHGV-0214457_73	eggNOG-mapper	1265505.ATUG01000002_gene2539	NA	NA
UHGV-0214457_73	AcrCatalog	cluster_11231	NA	NA
UHGV-0214457_74	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0214457_74	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0214457_74	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0214457_74	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0214457_74	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0214457_74	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0214457_74	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0214457_74	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0214457_77	UniRef90	UniRef90_A0A7Y9A8T2	Putative house-cleaning noncanonical NTP pyrophosphatase (MazG superfamily)	NA
UHGV-0214457_78	PHROG	phrog_1997	NA	unknown function
UHGV-0214457_81	Structural annotation	NF008911	NA	NA
UHGV-0214457_82	PHROG	phrog_10714	NA	unknown function
UHGV-0214457_83	PHROG	phrog_15198	NA	unknown function
UHGV-0214457_83	UniRef90	UniRef90_A0A0F0C886	NA	NA
UHGV-0214457_83	Pfam	PF04448	NA	DUF551