UHGV-0214533

Genome information

Genome length 27,539 bps

CDS count 47

Completeness 68.25% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0214533
vOTU ID	vOTU-017703
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS147377_a1_ct54902_vs01@Caudovirales__sp._ctuW439@linear
BioSample	SAMN00146594
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.76
Jumbo phage	No

Genome content
Genome length	27,539 bps
GC content	56.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.75%
Average CDS length	559.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0214533_1	PHROG	phrog_16490	NA	unknown function
UHGV-0214533_1	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0214533_2	PHROG	phrog_22984	NA	unknown function
UHGV-0214533_3	PHROG	phrog_21718	NA	unknown function
UHGV-0214533_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0214533_4	PHROG	phrog_3754	NA	unknown function
UHGV-0214533_4	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0214533_6	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0214533_6	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0214533_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0214533_7	PHROG	phrog_435	endolysin	lysis
UHGV-0214533_7	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0214533_7	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0214533_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0214533_7	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0214533_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0214533_7	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-0214533_9	PHROG	phrog_13256	NA	unknown function
UHGV-0214533_9	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0214533_10	PHROG	phrog_37604	NA	unknown function
UHGV-0214533_10	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0214533_11	UniRef90	UniRef90_A0A1Y4UUC3	XkdX family protein	NA
UHGV-0214533_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0214533_13	eggNOG-mapper	552398.HMPREF0866_02181	NA	NA
UHGV-0214533_14	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0214533_14	Structural annotation	PF00354	NA	NA
UHGV-0214533_15	PHROG	phrog_13879	NA	unknown function
UHGV-0214533_15	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0214533_15	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0214533_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0214533_17	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0214533_17	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0214533_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0214533_17	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0214533_19	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0214533_20	PHROG	phrog_885	major tail protein	tail
UHGV-0214533_20	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0214533_20	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0214533_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0214533_21	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0214533_21	Structural annotation	PF11367	NA	NA
UHGV-0214533_22	PHROG	phrog_17977	NA	unknown function
UHGV-0214533_22	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0214533_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0214533_23	PHROG	phrog_1236	head protein	head and packaging
UHGV-0214533_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0214533_24	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0214533_24	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0214533_24	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0214533_25	UniRef90	UniRef90_A0A3E0B009	Minor structural protein GP20	NA
UHGV-0214533_25	Structural annotation	PF06810	NA	NA
UHGV-0214533_26	Structural annotation	PF18152	NA	NA
UHGV-0214533_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0214533_28	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0214533_28	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0214533_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0214533_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0214533_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0214533_30	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0214533_30	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0214533_30	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0214533_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0214533_30	COG	COG2369	NA	NA
UHGV-0214533_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0214533_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0214533_31	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0214533_31	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0214533_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0214533_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0214533_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0214533_32	PHROG	phrog_10250	NA	unknown function
UHGV-0214533_32	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0214533_32	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0214533_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0214533_32	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0214533_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0214533_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0214533_32	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0214533_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0214533_33	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0214533_33	UniRef90	UniRef90_A0A431IA37	Methyltransferase	NA
UHGV-0214533_33	eggNOG-mapper	479437.Elen_2607	DNA methylase	NA
UHGV-0214533_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0214533_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0214533_33	COG	COG0863	DNA modification methylase	NA
UHGV-0214533_33	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0214533_35	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0214533_35	UniRef90	UniRef90_A0A374AXT0	Rha family transcriptional regulator	NA
UHGV-0214533_35	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0214533_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0214533_35	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0214533_35	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0214533_35	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0214533_36	eggNOG-mapper	216594.MMAR_1994	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0214533_36	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0214533_37	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0214533_37	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0214533_38	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0214533_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0214533_43	PHROG	phrog_38832	NA	unknown function
UHGV-0214533_43	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0214533_43	Structural annotation	PF07073	NA	NA
UHGV-0214533_44	PHROG	phrog_7704	NA	unknown function
UHGV-0214533_44	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0214533_44	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0214533_44	Pfam	PF04448	NA	DUF551
UHGV-0214533_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0214533_46	eggNOG-mapper	552398.HMPREF0866_03131	NA	NA
UHGV-0214533_47	PHROG	phrog_18079	NA	unknown function
UHGV-0214533_47	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0214533_47	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0214533_47	Structural annotation	NF007410	NA	NA