UHGV-0216053

Genome information

vOTU vOTU-020018

Genome length 21,686 bps

CDS count 29

Completeness 53.07% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0216053
vOTU ID	vOTU-020018
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR11236260_141_116678_round1256~3276422
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.88
Jumbo phage	No

Genome content
Genome length	21,686 bps
GC content	38.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	83.04%
Average CDS length	628.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0216053_1	PHROG	phrog_14652	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0216053_1	UniRef90	UniRef90_A0A7H4KPB3	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-0216053_1	eggNOG-mapper	1140002.I570_01455	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0216053_1	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0216053_1	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0216053_1	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0216053_2	PHROG	phrog_10419	NA	unknown function
UHGV-0216053_2	UniRef90	UniRef90_UPI001E318620	phosphocarrier protein HPr domain protein	NA
UHGV-0216053_2	eggNOG-mapper	1140002.I570_02901	NA	NA
UHGV-0216053_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0216053_3	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0216053_3	UniRef90	UniRef90_R2R6A3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0216053_3	eggNOG-mapper	1158602.I590_02973	C-5 cytosine-specific DNA methylase	NA
UHGV-0216053_3	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0216053_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0216053_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0216053_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0216053_3	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0216053_4	PHROG	phrog_34095	NA	unknown function
UHGV-0216053_4	UniRef90	UniRef90_UPI001C8CAF30	NA	NA
UHGV-0216053_4	eggNOG-mapper	1140002.I570_01452	NA	NA
UHGV-0216053_5	PHROG	phrog_5780	NA	unknown function
UHGV-0216053_5	eggNOG-mapper	1140002.I570_01451	NA	NA
UHGV-0216053_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0216053_6	UniRef90	UniRef90_UPI000F505473	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0216053_6	eggNOG-mapper	1140002.I570_01450	NA	NA
UHGV-0216053_6	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-0216053_7	PHROG	phrog_24047	NA	unknown function
UHGV-0216053_7	eggNOG-mapper	1140002.I570_01449	NA	NA
UHGV-0216053_8	PHROG	phrog_1202	NA	unknown function
UHGV-0216053_8	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0216053_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0216053_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0216053_9	UniRef90	UniRef90_A0A6B1T7J8	Terminase small subunit	NA
UHGV-0216053_9	eggNOG-mapper	1179226.AJXO01000005_gene1850	Terminase small subunit	NA
UHGV-0216053_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0216053_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0216053_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0216053_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0216053_10	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0216053_10	UniRef90	UniRef90_A0A7U6L3I8	Terminase	NA
UHGV-0216053_10	eggNOG-mapper	1140002.I570_01446	Terminase RNAseH like domain	NA
UHGV-0216053_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0216053_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0216053_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0216053_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0216053_10	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0216053_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0216053_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0216053_11	UniRef90	UniRef90_A0A7U6QVS9	Phage portal protein	NA
UHGV-0216053_11	eggNOG-mapper	673837.D2IZT6_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0216053_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0216053_11	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0216053_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0216053_12	KOfam	K07584	NA	NA
UHGV-0216053_12	PHROG	phrog_4478	peptidase	other
UHGV-0216053_12	UniRef90	UniRef90_UPI00066581AB	ribosomal-processing cysteine protease Prp	NA
UHGV-0216053_12	eggNOG-mapper	1140002.I570_01444	Pfam:Peptidase_C108	NA
UHGV-0216053_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0216053_12	COG	COG2868	NA	NA
UHGV-0216053_13	PHROG	phrog_12396	NA	unknown function
UHGV-0216053_13	UniRef90	UniRef90_C9AQ00	NA	NA
UHGV-0216053_13	eggNOG-mapper	797515.HMPREF9103_02945	NA	NA
UHGV-0216053_13	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-0216053_14	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0216053_14	UniRef90	UniRef90_UPI0006693751	minor capsid protein	NA
UHGV-0216053_14	eggNOG-mapper	1158607.UAU_01754	Phage Mu protein F like protein	NA
UHGV-0216053_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0216053_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0216053_14	COG	COG2369	NA	NA
UHGV-0216053_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0216053_15	PHROG	phrog_7268	NA	unknown function
UHGV-0216053_15	eggNOG-mapper	1158602.I590_00648	NA	NA
UHGV-0216053_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0216053_16	UniRef90	UniRef90_UPI000517F503	NA	NA
UHGV-0216053_16	eggNOG-mapper	1229517.AMFD01000023_gene1315	NA	NA
UHGV-0216053_16	Pfam	PF14265	NA	DUF4355
UHGV-0216053_16	Structural annotation	PF14265	NA	NA
UHGV-0216053_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-0216053_17	UniRef90	UniRef90_A0A7U6L3J2	Coat protein	NA
UHGV-0216053_17	eggNOG-mapper	673837.D2IZU0_9CAUD	viral capsid	NA
UHGV-0216053_17	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0216053_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0216053_18	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-0216053_18	UniRef90	UniRef90_UPI00137ABDD7	phage head-tail connector protein	NA
UHGV-0216053_18	eggNOG-mapper	1140002.I570_01440	NA	NA
UHGV-0216053_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0216053_18	Structural annotation	PF05135	NA	NA
UHGV-0216053_19	PHROG	phrog_2168	NA	unknown function
UHGV-0216053_19	UniRef90	UniRef90_D7RWJ2	Gp11	NA
UHGV-0216053_19	eggNOG-mapper	1140002.I570_01439	NA	NA
UHGV-0216053_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0216053_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0216053_20	UniRef90	UniRef90_UPI00178309EF	HK97 gp10 family phage protein	NA
UHGV-0216053_20	eggNOG-mapper	1140002.I570_01438	NA	NA
UHGV-0216053_20	Structural annotation	TIGR01725	NA	NA
UHGV-0216053_21	PHROG	phrog_78	tail terminator	connector
UHGV-0216053_21	eggNOG-mapper	1158602.I590_01689	NA	NA
UHGV-0216053_21	Structural annotation	PF05657	NA	NA
UHGV-0216053_22	PHROG	phrog_158	major tail protein	tail
UHGV-0216053_22	UniRef90	UniRef90_UPI000B4AA6D0	phage tail protein	NA
UHGV-0216053_22	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-0216053_22	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0216053_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0216053_23	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0216053_23	UniRef90	UniRef90_UPI00177CE503	NA	NA
UHGV-0216053_23	eggNOG-mapper	1140002.I570_01435	NA	NA
UHGV-0216053_23	Pfam	PF19591	NA	DUF6096
UHGV-0216053_23	Structural annotation	PF19591	NA	NA
UHGV-0216053_24	PHROG	phrog_2066	NA	unknown function
UHGV-0216053_24	eggNOG-mapper	1140002.I570_01434	NA	NA
UHGV-0216053_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0216053_25	eggNOG-mapper	1158602.I590_01693	SLT domain	NA
UHGV-0216053_25	COG	COG3953	SLT domain protein	NA
UHGV-0216053_26	PHROG	phrog_1157	transposase	integration and excision
UHGV-0216053_26	UniRef90	UniRef90_A0A1L8SMG5	Transposase	NA
UHGV-0216053_26	eggNOG-mapper	1158601.I585_02432	Integrase core domain	NA
UHGV-0216053_26	Pfam	PF00665	Integrase core domain	rve
UHGV-0216053_26	NCBIFam	NF033546.1	IS21 family transposase	NA
UHGV-0216053_26	COG	COG4584	Transposase	NA
UHGV-0216053_26	Structural annotation	PF02914, NF033546, COG4584	NA	NA
UHGV-0216053_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0216053_27	PHROG	phrog_27475	NA	unknown function
UHGV-0216053_27	UniRef90	UniRef90_A0A393NMS8	AAA family ATPase	NA
UHGV-0216053_27	eggNOG-mapper	525367.HMPREF0556_10211	Pfam PF01695	NA
UHGV-0216053_27	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0216053_27	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0216053_27	NCBIFam	NF038214.1	IS21-like element helper ATPase IstB	NA
UHGV-0216053_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0216053_27	Structural annotation	PF01695, MF_00377, NF038214, COG1484	NA	NA
UHGV-0216053_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0216053_28	eggNOG-mapper	1140002.I570_01433	SLT domain	NA
UHGV-0216053_28	COG	COG3953	SLT domain protein	NA
UHGV-0216053_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0216053_29	eggNOG-mapper	1158602.I590_01693	SLT domain	NA
UHGV-0216053_29	COG	COG3953	SLT domain protein	NA