UHGV-0218281

Genome information

vOTU vOTU-020310

Genome length 21,169 bps

CDS count 30

Completeness 53.59% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0218281
vOTU ID	vOTU-020310
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR2565687_141_3327_round8-12~325957
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.1
Jumbo phage	No

Genome content
Genome length	21,169 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.12%
Average CDS length	673.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0218281_1	UniRef90	UniRef90_A0A1X4JB54	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0218281_1	eggNOG-mapper	768486.EHR_09650	Ami_2	NA
UHGV-0218281_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0218281_2	PHROG	phrog_881	holin	lysis
UHGV-0218281_2	UniRef90	UniRef90_C9AN11	Holin	NA
UHGV-0218281_2	eggNOG-mapper	768486.EHR_09645	Putative phage holin Dp-1	NA
UHGV-0218281_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0218281_2	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0218281_3	PHROG	phrog_689	holin	lysis
UHGV-0218281_3	UniRef90	UniRef90_A0A0M4STB3	Holin	NA
UHGV-0218281_3	eggNOG-mapper	1158602.I590_03012	Haemolysin XhlA	NA
UHGV-0218281_3	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0218281_4	PHROG	phrog_1536	NA	unknown function
UHGV-0218281_4	eggNOG-mapper	565664.EFXG_01762	NA	NA
UHGV-0218281_5	PHROG	phrog_19591	NA	unknown function
UHGV-0218281_6	PHROG	phrog_9884	NA	unknown function
UHGV-0218281_6	UniRef90	UniRef90_A0A8A8GKV9	BppU family phage baseplate upper protein	NA
UHGV-0218281_6	eggNOG-mapper	1140001.I571_01169	NA	NA
UHGV-0218281_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0218281_6	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0218281_6	Structural annotation	PF10651, PF03422, PF08931, NF033675, NF040788	NA	NA
UHGV-0218281_7	PHROG	phrog_23883	NA	unknown function
UHGV-0218281_7	eggNOG-mapper	1140001.I571_01168	NA	NA
UHGV-0218281_8	PHROG	phrog_7064	tail protein	tail
UHGV-0218281_8	UniRef90	UniRef90_A0A2U9PFC0	Putative tail-associated lysin	NA
UHGV-0218281_8	eggNOG-mapper	1140001.I571_01167	NA	NA
UHGV-0218281_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0218281_9	PHROG	phrog_13564	minor tail protein	tail
UHGV-0218281_9	UniRef90	UniRef90_UPI001A96E772	phage baseplate protein	NA
UHGV-0218281_9	eggNOG-mapper	1140001.I571_01166	Baseplate protein	NA
UHGV-0218281_9	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0218281_9	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0218281_10	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0218281_10	UniRef90	UniRef90_A0A8A8GGY0	Tape measure protein	NA
UHGV-0218281_10	eggNOG-mapper	1140001.I571_01165	tape measure	NA
UHGV-0218281_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0218281_10	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0218281_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0218281_10	COG	COG3953	SLT domain protein	NA
UHGV-0218281_10	Structural annotation	PF15871, COG5280	NA	NA
UHGV-0218281_11	PHROG	phrog_5294	NA	unknown function
UHGV-0218281_12	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0218281_12	UniRef90	UniRef90_A0A0M4R2F4	Putative tail tape measure chaperone protein	NA
UHGV-0218281_12	eggNOG-mapper	1285586.H131_22017	NA	NA
UHGV-0218281_12	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0218281_13	PHROG	phrog_88	major tail protein	tail
UHGV-0218281_13	UniRef90	UniRef90_J8ZLJ8	Phage major tail protein, phi13 family	NA
UHGV-0218281_13	eggNOG-mapper	1140001.I571_01162	Phage tail tube protein	NA
UHGV-0218281_13	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0218281_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0218281_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0218281_14	PHROG	phrog_78	tail terminator	connector
UHGV-0218281_14	UniRef90	UniRef90_A0A060ANH4	Head-tail joining protein	NA
UHGV-0218281_14	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0218281_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0218281_15	UniRef90	UniRef90_U2QDZ1	Head-tail joining protein	NA
UHGV-0218281_15	eggNOG-mapper	767806.D7PQ47_9CAUD	NA	NA
UHGV-0218281_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0218281_15	Structural annotation	TIGR01725	NA	NA
UHGV-0218281_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0218281_16	UniRef90	UniRef90_A0A855PJH8	Head-tail adaptor protein	NA
UHGV-0218281_16	eggNOG-mapper	1140001.I571_01159	Phage head-tail joining protein	NA
UHGV-0218281_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0218281_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0218281_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0218281_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0218281_17	UniRef90	UniRef90_A0A133CLS9	Phage gp6-like head-tail connector protein	NA
UHGV-0218281_17	eggNOG-mapper	411465.PEPMIC_00008	Phage gp6-like head-tail connector protein	NA
UHGV-0218281_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0218281_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0218281_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0218281_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0218281_18	UniRef90	UniRef90_A0A855PAY0	Phage major capsid protein	NA
UHGV-0218281_18	eggNOG-mapper	1423755.BAML01000004_gene383	Phage capsid family	NA
UHGV-0218281_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0218281_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0218281_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0218281_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0218281_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0218281_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0218281_19	UniRef90	UniRef90_A0A6B3QC16	Clp protease ClpP	NA
UHGV-0218281_19	eggNOG-mapper	1423755.BAML01000004_gene384	Belongs to the peptidase S14 family	NA
UHGV-0218281_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0218281_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0218281_19	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0218281_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0218281_20	UniRef90	UniRef90_A0A829AGZ2	HK97 family phage portal protein	NA
UHGV-0218281_20	eggNOG-mapper	1329516.JPST01000016_gene394	portal protein	NA
UHGV-0218281_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0218281_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0218281_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0218281_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0218281_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0218281_21	UniRef90	UniRef90_UPI001CC7681F	terminase large subunit	NA
UHGV-0218281_21	eggNOG-mapper	1348908.KI518589_gene2540	Terminase	NA
UHGV-0218281_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0218281_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0218281_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0218281_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0218281_22	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0218281_22	UniRef90	UniRef90_A0A8G1S4D0	GIY-YIG domain-containing protein	NA
UHGV-0218281_22	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0218281_22	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0218281_22	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0218281_22	COG	COG3860	NA	NA
UHGV-0218281_22	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0218281_23	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0218281_23	UniRef90	UniRef90_A0A8G1S5F8	Ribbon-helix-helix domain-containing protein	NA
UHGV-0218281_23	eggNOG-mapper	1128398.Curi_c18520	Ribbon-helix-helix domain	NA
UHGV-0218281_23	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0218281_23	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0218281_24	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-0218281_24	UniRef90	UniRef90_A0A831EMN1	Phage terminase-like protein, large subunit	NA
UHGV-0218281_24	eggNOG-mapper	1348908.KI518589_gene2540	Terminase	NA
UHGV-0218281_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0218281_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0218281_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0218281_25	UniRef90	UniRef90_UPI001F04D4C0	phage terminase small subunit P27 family	NA
UHGV-0218281_25	eggNOG-mapper	768486.EHR_00655	phage terminase, small subunit	NA
UHGV-0218281_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0218281_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0218281_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0218281_26	PHROG	phrog_3202	NA	unknown function
UHGV-0218281_26	UniRef90	UniRef90_UPI001559DF72	YjzC family protein	NA
UHGV-0218281_26	eggNOG-mapper	1140001.I571_02103	YjzC-like protein	NA
UHGV-0218281_26	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0218281_26	Structural annotation	PF14168	NA	NA
UHGV-0218281_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0218281_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0218281_27	UniRef90	UniRef90_A0A8A8GMU4	HNH endonuclease	NA
UHGV-0218281_27	eggNOG-mapper	768486.EHR_00665	HNH endonuclease	NA
UHGV-0218281_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0218281_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0218281_28	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0218281_28	PHROG	phrog_23915	NA	unknown function
UHGV-0218281_28	UniRef90	UniRef90_A0A8A8GK52	Helix-turn-helix transcriptional regulator	NA
UHGV-0218281_28	eggNOG-mapper	1140001.I571_01739	NA	NA
UHGV-0218281_28	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0218281_29	PHROG	phrog_22957	NA	unknown function
UHGV-0218281_29	UniRef90	UniRef90_C9B4K2	Predicted protein	NA
UHGV-0218281_30	PHROG	phrog_1202	NA	unknown function
UHGV-0218281_30	UniRef90	UniRef90_C9APX8	Predicted protein	NA
UHGV-0218281_30	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-0218281_30	Structural annotation	PF18789	NA	NA