UHGV-0223839

Genome information

Genome length 27,388 bps

CDS count 45

Completeness 66.35% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0223839
vOTU ID	vOTU-031182
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR651278_99_938_round1256~2735434
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.63
Jumbo phage	No

Genome content
Genome length	27,388 bps
GC content	35.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.81%
Average CDS length	582.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0223839_1	PHROG	phrog_5902	NA	unknown function
UHGV-0223839_1	UniRef90	UniRef90_A0A496PFR2	Terminase (Fragment)	NA
UHGV-0223839_1	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0223839_1	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0223839_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0223839_2	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0223839_2	UniRef90	UniRef90_A0A239Z9J1	Terminase small subunit	NA
UHGV-0223839_2	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0223839_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0223839_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0223839_2	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0223839_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0223839_6	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-0223839_6	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0223839_6	Structural annotation	PF07374	NA	NA
UHGV-0223839_8	PHROG	phrog_21026	NA	unknown function
UHGV-0223839_11	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-0223839_11	UniRef90	UniRef90_UPI001D068F5F	YadA-like family protein	NA
UHGV-0223839_11	eggNOG-mapper	1128111.HMPREF0870_01786	Hep Hag repeat protein	NA
UHGV-0223839_11	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0223839_11	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-0223839_11	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-0223839_11	COG	COG5295	Autotransporter adhesin	NA
UHGV-0223839_11	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-0223839_12	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0223839_12	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0223839_12	UniRef90	UniRef90_UPI001D08FE4E	dUTP diphosphatase	NA
UHGV-0223839_12	eggNOG-mapper	36080.S2JYN8	dUTPase	NA
UHGV-0223839_12	Pfam	PF00692	dUTPase	dUTPase
UHGV-0223839_12	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0223839_12	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0223839_12	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0223839_13	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-0223839_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0223839_14	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0223839_14	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0223839_14	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0223839_15	PHROG	phrog_918	NA	unknown function
UHGV-0223839_15	UniRef90	UniRef90_UPI001960DED1	NA	NA
UHGV-0223839_15	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0223839_15	Pfam	PF19791	NA	DUF6275
UHGV-0223839_15	Structural annotation	PF19791	NA	NA
UHGV-0223839_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0223839_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0223839_16	UniRef90	UniRef90_UPI00196047F8	site-specific DNA-methyltransferase	NA
UHGV-0223839_16	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0223839_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0223839_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0223839_16	COG	COG0863	DNA modification methylase	NA
UHGV-0223839_16	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0223839_17	PHROG	phrog_1672	NA	unknown function
UHGV-0223839_17	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0223839_18	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0223839_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0223839_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0223839_19	UniRef90	UniRef90_UPI001D069DF3	single-stranded DNA-binding protein	NA
UHGV-0223839_19	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0223839_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0223839_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0223839_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0223839_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0223839_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0223839_22	PHROG	phrog_9804	NA	unknown function
UHGV-0223839_22	Structural annotation	PF11417	NA	NA
UHGV-0223839_23	PHROG	phrog_1163	NA	unknown function
UHGV-0223839_23	UniRef90	UniRef90_UPI001D075DB7	conserved phage C-terminal domain-containing protein	NA
UHGV-0223839_23	eggNOG-mapper	372457.A7DYC7_9CAUD	calcium ion binding	NA
UHGV-0223839_23	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0223839_23	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0223839_23	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0223839_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0223839_25	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0223839_25	UniRef90	UniRef90_UPI001D0937EE	HNH endonuclease	NA
UHGV-0223839_25	eggNOG-mapper	429009.Adeg_0841	PFAM HNH endonuclease	NA
UHGV-0223839_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0223839_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0223839_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0223839_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0223839_26	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0223839_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0223839_27	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0223839_27	UniRef90	UniRef90_UPI001402D75D	ERF family protein	NA
UHGV-0223839_27	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0223839_27	Pfam	PF04404	ERF superfamily	ERF
UHGV-0223839_27	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0223839_28	PHROG	phrog_674	NA	unknown function
UHGV-0223839_28	UniRef90	UniRef90_UPI000E71DE97	NA	NA
UHGV-0223839_28	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0223839_28	Pfam	PF07083	NA	DUF1351
UHGV-0223839_28	Structural annotation	PF07083	NA	NA
UHGV-0223839_29	Structural annotation	NF008912	NA	NA
UHGV-0223839_30	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0223839_30	UniRef90	UniRef90_UPI00195FD229	helix-turn-helix domain-containing protein	NA
UHGV-0223839_30	eggNOG-mapper	862517.HMPREF9225_0695	NA	NA
UHGV-0223839_30	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0223839_30	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0223839_32	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0223839_32	UniRef90	UniRef90_D1YMA5	DNA-binding helix-turn-helix protein	NA
UHGV-0223839_32	eggNOG-mapper	1401067.HMPREF0872_06900	DNA-binding helix-turn-helix protein	NA
UHGV-0223839_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0223839_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0223839_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0223839_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0223839_33	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0223839_33	UniRef90	UniRef90_UPI0007511C0F	helix-turn-helix domain-containing protein	NA
UHGV-0223839_33	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-0223839_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0223839_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0223839_33	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0223839_34	eggNOG-mapper	883156.HMPREF9282_00651	NA	NA
UHGV-0223839_34	Structural annotation	PF16747	NA	NA
UHGV-0223839_36	PHROG	phrog_20936	NA	unknown function
UHGV-0223839_36	UniRef90	UniRef90_UPI001D078346	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0223839_36	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-0223839_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0223839_36	Structural annotation	PF06114	NA	NA
UHGV-0223839_37	KOfam	K14059	int; integrase	NA
UHGV-0223839_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0223839_37	UniRef90	UniRef90_UPI001D0692F2	site-specific integrase	NA
UHGV-0223839_37	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0223839_37	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0223839_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0223839_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0223839_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0223839_37	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0223839_39	PHROG	phrog_10797	NA	unknown function
UHGV-0223839_39	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-0223839_39	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0223839_39	Structural annotation	PF06531	NA	NA
UHGV-0223839_40	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0223839_40	PHROG	phrog_894	endolysin	lysis
UHGV-0223839_40	UniRef90	UniRef90_A0A496P8E9	NA	NA
UHGV-0223839_40	eggNOG-mapper	613026.HRAG_01219	NA	NA
UHGV-0223839_40	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0223839_40	COG	COG3108	NA	NA
UHGV-0223839_40	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0223839_42	PHROG	phrog_23091	NA	unknown function
UHGV-0223839_42	Structural annotation	PF05105, NF035928	NA	NA
UHGV-0223839_44	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0223839_44	UniRef90	UniRef90_A0A2S7ZGN5	Pectate_lyase_3 domain-containing protein	NA
UHGV-0223839_44	eggNOG-mapper	1443111.JASG01000004_gene3704	Pectate lyase superfamily protein	NA
UHGV-0223839_44	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0223839_44	COG	COG5434	Polygalacturonase	NA
UHGV-0223839_44	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-0223839_45	PHROG	phrog_9880	NA	unknown function
UHGV-0223839_45	UniRef90	UniRef90_A0A239Z8B8	LPD3 domain-containing protein	NA
UHGV-0223839_45	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0223839_45	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0223839_45	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal