UHGV-0224732

Genome information

Genome length 36,094 bps

CDS count 50

Completeness 57.22% (medium-quality)

geNomad score 0.9425

Prediction confidence Confident

Genome information
Genome ID	UHGV-0224732
vOTU ID	vOTU-031194
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS147557_a1_ct39153_vs1@Siphoviridae__sp._ctwIc1
BioSample	SAMN00146774
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9425
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.92
Jumbo phage	No

Genome content
Genome length	36,094 bps
GC content	27.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.96%
Average CDS length	683.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0224732_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0224732_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0224732_1	UniRef90	UniRef90_A0A345BNV8	Resolvase	NA
UHGV-0224732_1	eggNOG-mapper	665959.HMPREF1013_00877	Recombinase	NA
UHGV-0224732_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0224732_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0224732_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0224732_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0224732_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0224732_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0224732_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0224732_3	UniRef90	UniRef90_A0A345BNV7	HTH_XRE protein	NA
UHGV-0224732_3	eggNOG-mapper	935948.KE386495_gene1211	Helix-turn-helix XRE-family like proteins	NA
UHGV-0224732_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0224732_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0224732_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0224732_5	UniRef90	UniRef90_A0A7C6H206	Helix-turn-helix transcriptional regulator	NA
UHGV-0224732_5	eggNOG-mapper	1582156.A0A0A8WIG0_9CAUD	BetR domain	NA
UHGV-0224732_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0224732_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0224732_7	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0224732_7	UniRef90	UniRef90_A0A345BNW0	Stage V sporulation protein S	NA
UHGV-0224732_7	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0224732_7	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0224732_8	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0224732_8	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0224732_8	UniRef90	UniRef90_A0A345BNW1	ATPase	NA
UHGV-0224732_8	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0224732_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-0224732_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0224732_8	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0224732_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0224732_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0224732_9	UniRef90	UniRef90_A0A345BNW2	RecT family protein	NA
UHGV-0224732_9	eggNOG-mapper	443254.Marpi_0301	RecT family	NA
UHGV-0224732_9	Pfam	PF03837	RecT family	RecT
UHGV-0224732_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0224732_9	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0224732_10	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0224732_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0224732_10	UniRef90	UniRef90_A0A345BNW3	YycJ-like protein	NA
UHGV-0224732_10	eggNOG-mapper	330397.A8ATK9_9CAUD	hydrolase activity	NA
UHGV-0224732_10	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0224732_10	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0224732_11	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0224732_11	UniRef90	UniRef90_A0A345BNV2	DnaD domain-containing protein	NA
UHGV-0224732_11	eggNOG-mapper	441768.ACL_0587	NA	NA
UHGV-0224732_11	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0224732_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0224732_11	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0224732_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0224732_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0224732_12	UniRef90	UniRef90_A0A380K591	DNA-binding phage protein	NA
UHGV-0224732_12	eggNOG-mapper	869209.Tresu_0643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0224732_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0224732_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0224732_12	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0224732_12	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0224732_14	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0224732_14	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0224732_14	UniRef90	UniRef90_A0A3E3DUV0	Adenine methyltransferase	NA
UHGV-0224732_14	eggNOG-mapper	1226322.HMPREF1545_00633	MT-A70	NA
UHGV-0224732_14	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0224732_14	Pfam	PF05063	MT-A70	MT-A70
UHGV-0224732_14	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0224732_14	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0224732_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0224732_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0224732_15	UniRef90	UniRef90_A0A6L9HCK4	Cytosine-specific methyltransferase	NA
UHGV-0224732_15	eggNOG-mapper	1410650.JHWL01000037_gene595	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0224732_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0224732_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0224732_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0224732_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0224732_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0224732_17	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0224732_17	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0224732_18	UniRef90	UniRef90_A0A844U3V8	Leucine-rich repeat protein	NA
UHGV-0224732_18	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0224732_20	PHROG	phrog_3136	NA	unknown function
UHGV-0224732_20	UniRef90	UniRef90_A0A345BNV4	RNA-binding domain containing protein	NA
UHGV-0224732_20	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0224732_23	PHROG	phrog_2412	NA	unknown function
UHGV-0224732_23	UniRef90	UniRef90_A0A345BNT6	Terminase large subunit	NA
UHGV-0224732_23	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0224732_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0224732_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0224732_24	UniRef90	UniRef90_A0A345BNW5	Terminase large subunit	NA
UHGV-0224732_24	eggNOG-mapper	693746.OBV_18820	Terminase-like family	NA
UHGV-0224732_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0224732_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0224732_24	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0224732_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0224732_25	UniRef90	UniRef90_A0A345BNV5	Putative portal protein	NA
UHGV-0224732_25	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0224732_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0224732_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0224732_26	UniRef90	UniRef90_A0A345BNW6	Minor capsid protein 2	NA
UHGV-0224732_26	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-0224732_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0224732_26	COG	COG2369	NA	NA
UHGV-0224732_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0224732_27	UniRef90	UniRef90_A0A345BNW7	Minor structural protein	NA
UHGV-0224732_27	eggNOG-mapper	665959.HMPREF1013_00201	Phage minor structural protein GP20	NA
UHGV-0224732_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0224732_27	Structural annotation	PF06810	NA	NA
UHGV-0224732_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0224732_28	UniRef90	UniRef90_A0A345BNV6	Putative major head protein	NA
UHGV-0224732_28	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0224732_31	Structural annotation	TIGR01725	NA	NA
UHGV-0224732_40	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0224732_43	PHROG	phrog_16490	NA	unknown function
UHGV-0224732_43	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0224732_44	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0224732_44	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0224732_46	PHROG	phrog_3754	NA	unknown function
UHGV-0224732_46	eggNOG-mapper	1278311.AUAL01000001_gene36	NA	NA