UHGV-0228181

Genome information

Genome length 32,649 bps

CDS count 35

Completeness 96.33% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0228181
vOTU ID	vOTU-011713
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS147919_a1_ct19632_vs1@Podoviridae__sp._ctxk01
BioSample	SAMN00147136
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.17
Jumbo phage	No

Genome content
Genome length	32,649 bps
GC content	53.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	91.19%
Average CDS length	857.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0228181_1	KOfam	K01989	K01989; putative tryptophan/tyrosine transport system substrate-binding protein	NA
UHGV-0228181_1	UniRef90	UniRef90_C9LR56	ABC transporter substrate binding protein	NA
UHGV-0228181_1	eggNOG-mapper	742743.HMPREF9453_00328	ABC transporter substrate binding protein	NA
UHGV-0228181_1	Pfam	PF04392	ABC transporter substrate binding protein	ABC_sub_bind
UHGV-0228181_1	COG	COG2984	NA	NA
UHGV-0228181_2	PHROG	phrog_10797	NA	unknown function
UHGV-0228181_2	UniRef90	UniRef90_A0A1B3X2S2	Glycoprotease	NA
UHGV-0228181_2	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-0228181_2	Structural annotation	PF20132	NA	NA
UHGV-0228181_3	KOfam	K14059	int; integrase	NA
UHGV-0228181_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0228181_3	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-0228181_3	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0228181_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0228181_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0228181_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0228181_5	PHROG	phrog_7032	tail fiber protein	tail
UHGV-0228181_5	eggNOG-mapper	864563.HMPREF9166_0550	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0228181_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0228181_6	PHROG	phrog_1084	NA	unknown function
UHGV-0228181_6	eggNOG-mapper	1485543.JMME01000005_gene881	NA	NA
UHGV-0228181_6	Structural annotation	PF10651	NA	NA
UHGV-0228181_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0228181_7	PHROG	phrog_291	endolysin	lysis
UHGV-0228181_7	UniRef90	UniRef90_UPI001D0872FD	glycosyl hydrolase family 25	NA
UHGV-0228181_7	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0228181_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0228181_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0228181_7	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0228181_8	PHROG	phrog_9854	NA	unknown function
UHGV-0228181_8	UniRef90	UniRef90_UPI001D087CF6	phage tail tip lysozyme	NA
UHGV-0228181_8	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0228181_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0228181_8	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0228181_8	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0228181_8	Structural annotation	PF18857, PF18013	NA	NA
UHGV-0228181_10	UniRef90	UniRef90_UPI001D07B8A4	Hint domain-containing protein	NA
UHGV-0228181_10	eggNOG-mapper	1485543.JMME01000020_gene776	NA	NA
UHGV-0228181_10	Pfam	PF13403	Hint domain	Hint_2
UHGV-0228181_10	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA
UHGV-0228181_11	Structural annotation	PF11039, MF_00084, NF000482, COG3818	NA	NA
UHGV-0228181_12	UniRef90	UniRef90_A0A1G5VKB0	Bacteriophage holin family protein	NA
UHGV-0228181_12	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0228181_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0228181_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0228181_14	PHROG	phrog_6465	tail protein	tail
UHGV-0228181_14	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0228181_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0228181_14	Structural annotation	PF20747	NA	NA
UHGV-0228181_15	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-0228181_15	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0228181_16	Structural annotation	PF20387	NA	NA
UHGV-0228181_18	PHROG	phrog_334	major head protein	head and packaging
UHGV-0228181_18	UniRef90	UniRef90_UPI00138A4297	N4-gp56 family major capsid protein	NA
UHGV-0228181_18	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0228181_18	Pfam	PF13252	NA	DUF4043
UHGV-0228181_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0228181_18	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0228181_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0228181_20	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0228181_20	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0228181_20	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0228181_20	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0228181_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0228181_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0228181_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0228181_22	UniRef90	UniRef90_UPI001D073785	phage terminase large subunit	NA
UHGV-0228181_22	eggNOG-mapper	401526.TcarDRAFT_1283	Phage terminase large subunit (GpA)	NA
UHGV-0228181_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0228181_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0228181_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0228181_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0228181_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0228181_23	UniRef90	UniRef90_UPI0003767E6D	terminase small subunit	NA
UHGV-0228181_23	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0228181_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0228181_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0228181_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0228181_24	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0228181_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0228181_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0228181_26	UniRef90	UniRef90_A0A3E3E0Z5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0228181_26	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0228181_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0228181_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0228181_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0228181_27	Structural annotation	NF034186	NA	NA
UHGV-0228181_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0228181_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0228181_30	UniRef90	UniRef90_A0A1I1X788	Single-stranded DNA-binding protein	NA
UHGV-0228181_30	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0228181_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0228181_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0228181_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0228181_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0228181_30	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0228181_31	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0228181_31	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-0228181_31	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0228181_31	Pfam	PF11753	NA	DUF3310
UHGV-0228181_32	PHROG	phrog_9804	NA	unknown function
UHGV-0228181_32	UniRef90	UniRef90_A0A285BFS2	Loader and inhibitor of phage G40P	NA
UHGV-0228181_32	Structural annotation	PF11417	NA	NA
UHGV-0228181_33	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0228181_33	UniRef90	UniRef90_UPI000C99E04B	conserved phage C-terminal domain-containing protein	NA
UHGV-0228181_33	eggNOG-mapper	1196322.A370_04074	DnaD domain protein	NA
UHGV-0228181_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0228181_33	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0228181_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0228181_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0228181_35	UniRef90	UniRef90_A0A134CHR9	Recombination and repair protein RecT	NA
UHGV-0228181_35	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-0228181_35	Pfam	PF03837	RecT family	RecT
UHGV-0228181_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0228181_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0228181_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA