UHGV-0228633

Genome information

Genome length 16,784 bps

CDS count 28

Completeness 52.09% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0228633
vOTU ID	vOTU-031228
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	DRR171485_141_115838_round13~7532441
BioSample	SAMD00164771
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.28
Jumbo phage	No

Genome content
Genome length	16,784 bps
GC content	59.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.15%
Average CDS length	574.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0228633_2	PHROG	phrog_3205	NA	unknown function
UHGV-0228633_2	eggNOG-mapper	1121342.AUCO01000012_gene1713	NA	NA
UHGV-0228633_3	PHROG	phrog_21525	NA	unknown function
UHGV-0228633_6	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0228633_6	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-0228633_6	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0228633_6	Pfam	PF11753	NA	DUF3310
UHGV-0228633_6	Structural annotation	PF11753	NA	NA
UHGV-0228633_9	KOfam	K14059	int; integrase	NA
UHGV-0228633_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0228633_9	UniRef90	UniRef90_A0A4Q2K1M9	Site-specific integrase	NA
UHGV-0228633_9	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0228633_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0228633_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0228633_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0228633_9	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0228633_10	UniRef90	UniRef90_UPI00103173DD	integration host factor	NA
UHGV-0228633_10	eggNOG-mapper	1381751.JAJB01000023_gene1732	integration host factor	NA
UHGV-0228633_10	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0228633_10	COG	COG0099	Ribosomal protein S13	NA
UHGV-0228633_10	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0228633_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0228633_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0228633_12	UniRef90	UniRef90_A0A374TTE0	Single-stranded DNA-binding protein	NA
UHGV-0228633_12	eggNOG-mapper	1118060.CAGZ01000028_gene971	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0228633_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0228633_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0228633_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0228633_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0228633_12	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0228633_13	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0228633_13	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0228633_13	UniRef90	UniRef90_A0A374TU31	dUTP diphosphatase	NA
UHGV-0228633_13	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0228633_13	Pfam	PF00692	dUTPase	dUTPase
UHGV-0228633_13	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0228633_13	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0228633_13	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0228633_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0228633_14	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0228633_14	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0228633_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0228633_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0228633_15	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-0228633_15	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0228633_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0228633_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0228633_16	PHROG	phrog_1066	NA	unknown function
UHGV-0228633_16	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0228633_16	Structural annotation	TIGR01558	NA	NA
UHGV-0228633_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0228633_17	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-0228633_17	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0228633_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0228633_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0228633_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0228633_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0228633_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0228633_18	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-0228633_18	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0228633_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0228633_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0228633_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0228633_19	KOfam	K06904	NA	NA
UHGV-0228633_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0228633_19	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-0228633_19	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0228633_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0228633_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0228633_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0228633_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0228633_20	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0228633_20	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0228633_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0228633_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0228633_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0228633_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0228633_21	PHROG	phrog_5223	neck protein	connector
UHGV-0228633_21	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-0228633_21	eggNOG-mapper	1444310.JANV01000004_gene2679	NA	NA
UHGV-0228633_21	Structural annotation	TIGR01560	NA	NA
UHGV-0228633_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0228633_22	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0228633_22	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-0228633_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0228633_23	UniRef90	UniRef90_UPI001F4ED2E2	HK97 gp10 family phage protein	NA
UHGV-0228633_23	eggNOG-mapper	1220589.CD32_00820	NA	NA
UHGV-0228633_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0228633_24	eggNOG-mapper	1121105.ATXL01000027_gene750	NA	NA
UHGV-0228633_24	Structural annotation	PF05657, TIGR04412	NA	NA
UHGV-0228633_25	PHROG	phrog_88	major tail protein	tail
UHGV-0228633_25	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0228633_25	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0228633_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0228633_26	Structural annotation	PF12363	NA	NA
UHGV-0228633_28	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0228633_28	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0228633_28	UniRef90	UniRef90_A0A374TRG7	PhageMin_Tail domain-containing protein	NA
UHGV-0228633_28	eggNOG-mapper	663278.Ethha_1846	Phage tail tape measure protein, TP901 family	NA
UHGV-0228633_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0228633_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0228633_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0228633_28	Structural annotation	COG5280	NA	NA