UHGV-0229108

Genome information

Genome length 41,839 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0229108
vOTU ID	vOTU-009544
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS147652_a1_ct26756_vs1@Siphoviridae__sp._ctmjo1
BioSample	SAMN00146869
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.48
Jumbo phage	No

Genome content
Genome length	41,839 bps
GC content	40.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.33%
Average CDS length	560.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0229108_1	KOfam	K14059	int; integrase	NA
UHGV-0229108_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0229108_1	UniRef90	UniRef90_A0A2Z4GUA2	Integrase	NA
UHGV-0229108_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0229108_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0229108_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0229108_2	UniRef90	UniRef90_A0A2Z4GUA9	Helix-turn-helix XRE-family like protein	NA
UHGV-0229108_2	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0229108_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0229108_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0229108_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0229108_4	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0229108_4	UniRef90	UniRef90_F1TH35	NA	NA
UHGV-0229108_4	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0229108_4	Structural annotation	COG2250	NA	NA
UHGV-0229108_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0229108_7	eggNOG-mapper	1009370.ALO_02276	NA	NA
UHGV-0229108_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0229108_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0229108_10	UniRef90	UniRef90_A0A3C2DVT6	XRE family transcriptional regulator	NA
UHGV-0229108_10	eggNOG-mapper	717605.Theco_0932	Helix-turn-helix	NA
UHGV-0229108_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0229108_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0229108_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0229108_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0229108_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0229108_11	UniRef90	UniRef90_A0A3C2DXQ3	Transcriptional regulator	NA
UHGV-0229108_11	eggNOG-mapper	1196028.ALEF01000025_gene1665	Helix-turn-helix domain	NA
UHGV-0229108_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0229108_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0229108_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0229108_12	Structural annotation	PF06531	NA	NA
UHGV-0229108_13	Structural annotation	PF14634	NA	NA
UHGV-0229108_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0229108_15	UniRef90	UniRef90_I7K5R8	YqaJ domain-containing protein	NA
UHGV-0229108_15	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0229108_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0229108_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0229108_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0229108_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0229108_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0229108_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0229108_16	UniRef90	UniRef90_A0A1C5ZAS0	p33	NA
UHGV-0229108_16	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0229108_16	Pfam	PF03837	RecT family	RecT
UHGV-0229108_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0229108_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0229108_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0229108_17	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0229108_17	eggNOG-mapper	521460.Athe_2433	NA	NA
UHGV-0229108_17	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0229108_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0229108_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0229108_18	UniRef90	UniRef90_UPI00195D70F7	DnaA/Hda family protein	NA
UHGV-0229108_18	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-0229108_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0229108_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0229108_19	KOfam	K24174	METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]	NA
UHGV-0229108_19	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0229108_19	UniRef90	UniRef90_A0A0E3ZR78	Modification methylase MunI	NA
UHGV-0229108_19	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0229108_19	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0229108_19	Pfam	PF05063	MT-A70	MT-A70
UHGV-0229108_19	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0229108_19	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0229108_20	PHROG	phrog_4973	NA	unknown function
UHGV-0229108_20	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0229108_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0229108_20	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0229108_21	UniRef90	UniRef90_UPI00192A6863	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0229108_21	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0229108_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0229108_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0229108_22	PHROG	phrog_14105	NA	unknown function
UHGV-0229108_22	UniRef90	UniRef90_UPI001C0F49DD	pentapeptide repeat-containing protein	NA
UHGV-0229108_22	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0229108_22	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0229108_22	COG	COG5651	PPE-repeat protein	NA
UHGV-0229108_23	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0229108_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0229108_23	UniRef90	UniRef90_A0A0D8IXI8	PAPS_reduct domain-containing protein	NA
UHGV-0229108_23	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0229108_23	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0229108_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0229108_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0229108_23	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0229108_27	PHROG	phrog_8684	NA	unknown function
UHGV-0229108_27	UniRef90	UniRef90_A0A1Y3WA66	YopX domain-containing protein	NA
UHGV-0229108_27	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0229108_27	Pfam	PF09643	YopX protein	YopX
UHGV-0229108_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0229108_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0229108_30	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0229108_30	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0229108_30	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-0229108_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0229108_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0229108_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0229108_36	UniRef90	UniRef90_A0A285TIT4	5-methylcytosine-specific restriction protein A	NA
UHGV-0229108_36	eggNOG-mapper	1188256.BASI01000001_gene1096	HNH nucleases	NA
UHGV-0229108_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0229108_36	Structural annotation	PF01844	NA	NA
UHGV-0229108_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0229108_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0229108_38	UniRef90	UniRef90_A0A4V0Y190	Terminase	NA
UHGV-0229108_38	eggNOG-mapper	1501230.ET33_21210	Terminase	NA
UHGV-0229108_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0229108_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0229108_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0229108_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0229108_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0229108_39	UniRef90	UniRef90_A0A3D2X9R2	Phage portal protein	NA
UHGV-0229108_39	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0229108_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0229108_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0229108_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0229108_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0229108_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0229108_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0229108_40	UniRef90	UniRef90_A0A150MQ80	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0229108_40	eggNOG-mapper	1382315.JPOI01000001_gene282	Serine dehydrogenase proteinase	NA
UHGV-0229108_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0229108_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0229108_40	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0229108_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0229108_41	UniRef90	UniRef90_UPI00067EA767	phage major capsid protein	NA
UHGV-0229108_41	eggNOG-mapper	646529.Desaci_1301	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0229108_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0229108_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0229108_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0229108_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0229108_42	UniRef90	UniRef90_A0A0A7RWM0	Head-tail connector	NA
UHGV-0229108_42	eggNOG-mapper	1567011.A0A0A7RWM0_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0229108_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0229108_42	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0229108_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0229108_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0229108_43	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0229108_45	PHROG	phrog_88	major tail protein	tail
UHGV-0229108_50	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0229108_50	eggNOG-mapper	1278311.AUAL01000001_gene20	phage tail tape measure protein	NA
UHGV-0229108_50	COG	COG4372	NA	NA
UHGV-0229108_50	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0229108_51	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0229108_52	PHROG	phrog_7064	tail protein	tail
UHGV-0229108_52	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0229108_61	PHROG	phrog_16490	NA	unknown function
UHGV-0229108_61	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0229108_62	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA