UHGV-0229465

Genome information

vOTU vOTU-020346

Genome length 30,267 bps

CDS count 44

Completeness 65.04% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0229465
vOTU ID	vOTU-020346
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_9086_round347~4960636
BioSample	SAMN14271006
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	20
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.92
Jumbo phage	No

Genome content
Genome length	30,267 bps
GC content	50.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	87.88%
Average CDS length	608.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0229465_1	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0229465_1	UniRef90	UniRef90_UPI0010CBA1D3	NA	NA
UHGV-0229465_1	eggNOG-mapper	754331.AEME01000001_gene4290	Putative HNHc nuclease	NA
UHGV-0229465_1	Pfam	PF06147	NA	DUF968
UHGV-0229465_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0229465_2	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0229465_2	UniRef90	UniRef90_P76161	Prophage antitermination protein Q homolog QuuQ	NA
UHGV-0229465_2	eggNOG-mapper	55884.Q8SBE4_BPSF5	Antitermination protein	NA
UHGV-0229465_2	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0229465_2	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0229465_2	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0229465_3	PHROG	phrog_7682	NA	unknown function
UHGV-0229465_3	UniRef90	UniRef90_A0A7W5NSQ0	Zn finger protein HypA/HybF involved in hydrogenase expression	NA
UHGV-0229465_3	eggNOG-mapper	697329.Rumal_0667	NA	NA
UHGV-0229465_4	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0229465_4	UniRef90	UniRef90_A0A066Q388	Holin	NA
UHGV-0229465_4	eggNOG-mapper	220341.16503085	Phage holin family (Lysis protein S)	NA
UHGV-0229465_4	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0229465_4	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0229465_4	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0229465_5	PHROG	phrog_17029	NA	unknown function
UHGV-0229465_5	UniRef90	UniRef90_A0A1M2DY24	Lysozyme	NA
UHGV-0229465_5	eggNOG-mapper	155864.EDL933_1819	Phage lysozyme	NA
UHGV-0229465_5	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0229465_5	COG	COG4678	Muramidase (phage lambda lysozyme)	NA
UHGV-0229465_5	HAMAP	MF_04109	Endolysin	NA
UHGV-0229465_5	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0229465_6	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0229465_6	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0229465_6	UniRef90	UniRef90_A0A653FRE1	Spanin, inner membrane subunit	NA
UHGV-0229465_6	eggNOG-mapper	1127357.I1TEI0_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0229465_6	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0229465_6	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0229465_6	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0229465_7	PHROG	phrog_11822	NA	unknown function
UHGV-0229465_7	UniRef90	UniRef90_A0A0H0GM05	Bacteriophage protein (Gene 65)	NA
UHGV-0229465_7	eggNOG-mapper	1147152.K7PKL2_9CAUD	NA	NA
UHGV-0229465_8	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0229465_8	UniRef90	UniRef90_A0A1Y2XHC5	DNA-binding protein	NA
UHGV-0229465_8	eggNOG-mapper	155148.Q9AZ05_BPHK6	KilA-N domain	NA
UHGV-0229465_8	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0229465_8	Pfam	PF10549	ORF11CD3 domain	ORF11CD3
UHGV-0229465_8	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-0229465_9	PHROG	phrog_875	NA	unknown function
UHGV-0229465_9	eggNOG-mapper	155148.Q9AZ04_BPHK6	NA	NA
UHGV-0229465_10	PHROG	phrog_585	NA	unknown function
UHGV-0229465_10	UniRef90	UniRef90_UPI0005110869	NA	NA
UHGV-0229465_10	eggNOG-mapper	218493.SBG_0918	NA	NA
UHGV-0229465_10	Structural annotation	PF10711, MF_01819, NF002926	NA	NA
UHGV-0229465_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0229465_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0229465_11	UniRef90	UniRef90_UPI00128FC359	HNH endonuclease	NA
UHGV-0229465_11	eggNOG-mapper	754331.AEME01000001_gene4282	Endonuclease	NA
UHGV-0229465_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0229465_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0229465_11	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0229465_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0229465_12	UniRef90	UniRef90_A0A2A7U7F5	Phage terminase small subunit P27 family	NA
UHGV-0229465_12	eggNOG-mapper	1216966.BAUC01000041_gene2878	terminase	NA
UHGV-0229465_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0229465_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0229465_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0229465_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0229465_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0229465_13	UniRef90	UniRef90_A0A0D8VBB7	Terminase	NA
UHGV-0229465_13	eggNOG-mapper	90371.CY43_10645	Phage Terminase	NA
UHGV-0229465_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0229465_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0229465_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0229465_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0229465_14	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0229465_14	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-0229465_14	eggNOG-mapper	1216966.BAUC01000041_gene2876	NA	NA
UHGV-0229465_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0229465_15	UniRef90	UniRef90_W1F7T5	Phage portal protein	NA
UHGV-0229465_15	eggNOG-mapper	1216966.BAUC01000041_gene2875	portal protein	NA
UHGV-0229465_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0229465_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0229465_15	Structural annotation	PF05136, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0229465_16	PHROG	phrog_5929	portal protein	head and packaging
UHGV-0229465_16	UniRef90	UniRef90_UPI0010228E0C	phage portal protein	NA
UHGV-0229465_16	eggNOG-mapper	1440052.EAKF1_ch0464c	Phage portal protein	NA
UHGV-0229465_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0229465_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0229465_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0229465_17	KOfam	K06904	NA	NA
UHGV-0229465_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0229465_17	UniRef90	UniRef90_Q8HAD3	Sb5	NA
UHGV-0229465_17	eggNOG-mapper	1440052.EAKF1_ch0463c	Caudovirus prohead serine protease	NA
UHGV-0229465_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0229465_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0229465_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0229465_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0229465_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0229465_18	UniRef90	UniRef90_Q8HAD2	Sb6	NA
UHGV-0229465_18	eggNOG-mapper	1407493.U5P0G9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0229465_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0229465_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0229465_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0229465_19	PHROG	phrog_1020	NA	unknown function
UHGV-0229465_19	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0229465_19	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0229465_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0229465_20	UniRef90	UniRef90_A0A024L3U4	Phage DNA packaging protein	NA
UHGV-0229465_20	eggNOG-mapper	754331.AEME01000001_gene207	Phage gp6-like head-tail connector protein	NA
UHGV-0229465_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0229465_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0229465_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0229465_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0229465_21	UniRef90	UniRef90_B7LJM4	Putative phage head-tail adaptor	NA
UHGV-0229465_21	eggNOG-mapper	754331.AEME01000001_gene208	Phage head-tail joining protein	NA
UHGV-0229465_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0229465_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0229465_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0229465_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0229465_22	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0229465_22	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-0229465_22	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-0229465_22	Structural annotation	TIGR01725	NA	NA
UHGV-0229465_23	PHROG	phrog_209	portal protein	head and packaging
UHGV-0229465_23	UniRef90	UniRef90_A0A061KQS1	NA	NA
UHGV-0229465_23	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-0229465_23	Structural annotation	PF09646	NA	NA
UHGV-0229465_24	PHROG	phrog_208	NA	unknown function
UHGV-0229465_24	UniRef90	UniRef90_J7Q674	NA	NA
UHGV-0229465_24	eggNOG-mapper	754331.AEME01000001_gene211	NA	NA
UHGV-0229465_24	Pfam	PF10948	NA	DUF2635
UHGV-0229465_24	Structural annotation	PF10948	NA	NA
UHGV-0229465_25	PHROG	phrog_165	tail sheath	tail
UHGV-0229465_25	UniRef90	UniRef90_Q8SBH2	Tail sheath protein	NA
UHGV-0229465_25	eggNOG-mapper	1225789.M1FN90_9CAUD	Phage tail sheath protein	NA
UHGV-0229465_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0229465_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0229465_25	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0229465_26	PHROG	phrog_185	tail tube protein	tail
UHGV-0229465_26	UniRef90	UniRef90_J7QME8	NA	NA
UHGV-0229465_26	eggNOG-mapper	1225789.M1FJ91_9CAUD	Phage tail tube protein	NA
UHGV-0229465_26	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0229465_26	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0229465_27	PHROG	phrog_166	tail protein	tail
UHGV-0229465_27	UniRef90	UniRef90_A0A3A5JV55	Phage tail assembly protein	NA
UHGV-0229465_27	eggNOG-mapper	1216966.BAUC01000041_gene2866	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0229465_27	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0229465_27	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0229465_28	PHROG	phrog_26612	NA	unknown function
UHGV-0229465_28	UniRef90	UniRef90_Q8SBG9	Probable tape measure protein	NA
UHGV-0229465_28	eggNOG-mapper	55884.Q8SBG9_BPSF5	amidase activity	NA
UHGV-0229465_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0229465_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0229465_28	Structural annotation	TIGR01760	NA	NA
UHGV-0229465_29	PHROG	phrog_8976	NA	unknown function
UHGV-0229465_30	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0229465_30	UniRef90	UniRef90_B7LJN3	Tail/DNA circulation protein	NA
UHGV-0229465_30	eggNOG-mapper	55884.Q8SBG8_BPSF5	DNA circularisation protein N-terminus	NA
UHGV-0229465_30	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0229465_30	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0229465_31	PHROG	phrog_177	tail protein	tail
UHGV-0229465_31	UniRef90	UniRef90_E3PEH3	Putative phage tail protein	NA
UHGV-0229465_31	eggNOG-mapper	1407493.U5P0H6_9CAUD	NA	NA
UHGV-0229465_31	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0229465_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0229465_32	PHROG	phrog_28548	NA	unknown function
UHGV-0229465_32	UniRef90	UniRef90_A0A5F0A122	Baseplate assembly protein	NA
UHGV-0229465_32	eggNOG-mapper	66284.S5FXM5_BPSF2	Bacteriophage Mu Gp45 protein	NA
UHGV-0229465_32	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0229465_32	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0229465_32	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0229465_33	PHROG	phrog_180	tail protein	tail
UHGV-0229465_33	UniRef90	UniRef90_A0A093D1I0	Bacteriophage V tail protein	NA
UHGV-0229465_33	eggNOG-mapper	1225789.M1FPE5_9CAUD	Phage protein GP46	NA
UHGV-0229465_33	Pfam	PF07409	NA	GP46
UHGV-0229465_33	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0229465_34	PHROG	phrog_6	baseplate protein	tail
UHGV-0229465_34	UniRef90	UniRef90_A0A4C4LBQ7	Baseplate_J domain-containing protein	NA
UHGV-0229465_34	eggNOG-mapper	1225789.M1FQW3_9CAUD	Baseplate J-like protein	NA
UHGV-0229465_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0229465_34	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0229465_35	PHROG	phrog_203	tail protein	tail
UHGV-0229465_35	UniRef90	UniRef90_UPI0009006D48	NA	NA
UHGV-0229465_35	eggNOG-mapper	55884.O22003_BPSF5	NA	NA
UHGV-0229465_35	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0229465_35	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0229465_36	PHROG	phrog_18834	NA	unknown function
UHGV-0229465_36	UniRef90	UniRef90_A0A2H9A4G0	Tail fiber protein	NA
UHGV-0229465_36	eggNOG-mapper	1225789.M1FN94_9CAUD	NA	NA
UHGV-0229465_36	Structural annotation	NF012201	NA	NA
UHGV-0229465_37	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0229465_37	UniRef90	UniRef90_A0A222B5N6	CPS-53 (KpLE1) prophage protein	NA
UHGV-0229465_37	eggNOG-mapper	316407.1799752	response to oxidative stress	NA
UHGV-0229465_37	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0229465_37	Structural annotation	PF02413	NA	NA
UHGV-0229465_38	PHROG	phrog_105	tail fiber assembly	tail
UHGV-0229465_38	UniRef90	UniRef90_A0A0F7LDQ5	Putative tail fiber assembly protein	NA
UHGV-0229465_38	eggNOG-mapper	481805.EcolC_2759	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-0229465_38	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0229465_38	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0229465_38	Structural annotation	PF02413	NA	NA
UHGV-0229465_39	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0229465_39	UniRef90	UniRef90_UPI001653CD0C	phage tail protein	NA
UHGV-0229465_39	eggNOG-mapper	481805.EcolC_2758	Phage Tail Collar Domain	NA
UHGV-0229465_39	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0229465_39	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0229465_39	Structural annotation	COG4675	NA	NA
UHGV-0229465_40	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0229465_40	PHROG	phrog_8275	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0229465_40	UniRef90	UniRef90_UPI00145C33F6	recombinase family protein	NA
UHGV-0229465_40	eggNOG-mapper	316407.1651570	This protein catalyzes the inversion of an 1800-bp E.coli DNA fragment, the P region, which can exist in either orientation. The function of the inversion is not yet clear	NA
UHGV-0229465_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0229465_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0229465_41	eggNOG-mapper	207954.MED92_14063	NA	NA
UHGV-0229465_43	eggNOG-mapper	1005994.GTGU_00848	NA	NA
UHGV-0229465_44	UniRef90	UniRef90_A0A6P3CN26	Transcriptional regulator	NA
UHGV-0229465_44	eggNOG-mapper	316407.85674426	transcriptional regulator	NA
UHGV-0229465_44	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA