UHGV-0231439

Genome information

Genome length 29,183 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0231439
vOTU ID	vOTU-049339
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8133871_141_14344_round1256~4253164
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.16
Jumbo phage	No

Genome content
Genome length	29,183 bps
GC content	46.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.31%
Average CDS length	550.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0231439_1	COG	COG2369	NA	NA
UHGV-0231439_3	PHROG	phrog_263	holin	lysis
UHGV-0231439_3	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0231439_3	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0231439_3	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0231439_3	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0231439_3	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0231439_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0231439_4	PHROG	phrog_435	endolysin	lysis
UHGV-0231439_4	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0231439_4	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0231439_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0231439_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0231439_4	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0231439_5	PHROG	phrog_27545	NA	unknown function
UHGV-0231439_5	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0231439_5	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0231439_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0231439_9	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0231439_9	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0231439_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0231439_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0231439_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0231439_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0231439_11	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-0231439_11	eggNOG-mapper	386415.NT01CX_0834	Phage terminase, large subunit, PBSX family	NA
UHGV-0231439_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0231439_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0231439_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0231439_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0231439_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0231439_12	PHROG	phrog_2412	NA	unknown function
UHGV-0231439_12	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0231439_12	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0231439_12	Structural annotation	PF18932	NA	NA
UHGV-0231439_15	PHROG	phrog_30822	NA	unknown function
UHGV-0231439_15	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-0231439_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0231439_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0231439_17	UniRef90	UniRef90_A0A420W5G5	Methyltransferase	NA
UHGV-0231439_17	eggNOG-mapper	445688.E3SNH3_9CAUD	N-methyltransferase activity	NA
UHGV-0231439_17	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0231439_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0231439_17	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0231439_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0231439_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0231439_18	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0231439_18	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0231439_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0231439_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0231439_19	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0231439_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0231439_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0231439_21	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0231439_21	eggNOG-mapper	1280698.AUJS01000037_gene120	IstB-like ATP binding protein	NA
UHGV-0231439_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0231439_21	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0231439_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0231439_21	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0231439_22	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0231439_22	UniRef90	UniRef90_UPI0011C34505	conserved phage C-terminal domain-containing protein	NA
UHGV-0231439_22	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0231439_22	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0231439_22	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0231439_22	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0231439_22	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0231439_24	PHROG	phrog_27197	NA	unknown function
UHGV-0231439_24	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0231439_24	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0231439_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0231439_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0231439_25	UniRef90	UniRef90_A0A316T6C0	Single-stranded DNA-binding protein	NA
UHGV-0231439_25	eggNOG-mapper	1507.HMPREF0262_00434	Single-stranded DNA-binding protein	NA
UHGV-0231439_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0231439_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0231439_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0231439_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0231439_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0231439_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0231439_27	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0231439_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0231439_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0231439_28	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0231439_28	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0231439_28	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0231439_28	Pfam	PF06378	NA	DUF1071
UHGV-0231439_28	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0231439_33	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0231439_33	PHROG	phrog_18750	NA	unknown function
UHGV-0231439_33	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0231439_33	eggNOG-mapper	1519439.JPJG01000051_gene725	Cell wall hydrolase	NA
UHGV-0231439_33	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0231439_33	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0231439_33	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0231439_34	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0231439_34	UniRef90	UniRef90_A0A136Q8Q2	Ser/Thr phosphatase family protein	NA
UHGV-0231439_34	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-0231439_34	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0231439_34	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0231439_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0231439_37	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-0231439_37	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0231439_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0231439_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0231439_37	COG	COG4926	Phage-related protein	NA
UHGV-0231439_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0231439_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0231439_38	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0231439_38	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0231439_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0231439_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-0231439_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0231439_39	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0231439_39	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0231439_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0231439_39	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0231439_42	PHROG	phrog_885	major tail protein	tail
UHGV-0231439_42	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0231439_42	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0231439_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0231439_43	PHROG	phrog_17405	head protein	head and packaging
UHGV-0231439_43	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0231439_43	Structural annotation	PF11367	NA	NA
UHGV-0231439_44	PHROG	phrog_17977	NA	unknown function
UHGV-0231439_44	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0231439_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0231439_47	PHROG	phrog_267	major head protein	head and packaging
UHGV-0231439_47	UniRef90	UniRef90_F8UBM2	p22 coat protein	NA
UHGV-0231439_47	eggNOG-mapper	673376.F2VHW8_9CAUD	viral capsid	NA
UHGV-0231439_47	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0231439_48	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0231439_48	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0231439_48	Structural annotation	PF06810	NA	NA
UHGV-0231439_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0231439_49	UniRef90	UniRef90_A0A6H1MR47	Putative tail component	NA
UHGV-0231439_49	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0231439_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0231439_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0231439_50	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0231439_50	UniRef90	UniRef90_UPI000E3D585E	minor capsid protein	NA
UHGV-0231439_50	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0231439_50	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0231439_50	COG	COG2369	NA	NA