UHGV-0231454

Genome information

vOTU vOTU-019425

Genome length 35,844 bps

CDS count 59

Completeness 82.95% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0231454
vOTU ID	vOTU-019425
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR6048475_141_85576_round347~3745611
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.08
Jumbo phage	No

Genome content
Genome length	35,844 bps
GC content	38.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.64%
Average CDS length	560.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0231454_3	PHROG	phrog_5867	endolysin	lysis
UHGV-0231454_3	UniRef90	UniRef90_D6KLI5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0231454_3	eggNOG-mapper	1128111.HMPREF0870_01749	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0231454_3	Structural annotation	MF_04111	NA	NA
UHGV-0231454_4	PHROG	phrog_27828	NA	unknown function
UHGV-0231454_4	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0231454_4	eggNOG-mapper	1128111.HMPREF0870_01750	NA	NA
UHGV-0231454_5	PHROG	phrog_23091	NA	unknown function
UHGV-0231454_7	Structural annotation	PF21611	NA	NA
UHGV-0231454_8	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0231454_8	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-0231454_8	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0231454_8	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0231454_8	Structural annotation	PF12571, NF012201	NA	NA
UHGV-0231454_9	PHROG	phrog_14404	baseplate protein	tail
UHGV-0231454_9	UniRef90	UniRef90_A0A134C9I1	Phage tail protein I-like protein	NA
UHGV-0231454_9	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-0231454_9	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0231454_9	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0231454_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0231454_9	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0231454_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0231454_10	UniRef90	UniRef90_A0A811GJD5	Baseplate_J domain-containing protein	NA
UHGV-0231454_10	eggNOG-mapper	1064535.MELS_1111	Baseplate J-like protein	NA
UHGV-0231454_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0231454_10	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0231454_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0231454_11	KOfam	K06903	NA	NA
UHGV-0231454_11	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0231454_11	UniRef90	UniRef90_A0A134C9E2	Putative lysozyme	NA
UHGV-0231454_11	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0231454_11	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0231454_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0231454_11	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0231454_12	PHROG	phrog_76	tail protein	tail
UHGV-0231454_12	UniRef90	UniRef90_UPI000F8D1A61	phage tail protein	NA
UHGV-0231454_12	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0231454_12	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0231454_12	COG	COG3499	NA	NA
UHGV-0231454_12	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0231454_13	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0231454_13	UniRef90	UniRef90_D6KLH4	Prophage MuMc02, baseplate assembly protein V	NA
UHGV-0231454_13	eggNOG-mapper	1064535.MELS_1108	Phage baseplate assembly protein V	NA
UHGV-0231454_13	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0231454_13	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0231454_13	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0231454_14	KOfam	K06905	NA	NA
UHGV-0231454_14	PHROG	phrog_52	tail protein	tail
UHGV-0231454_14	UniRef90	UniRef90_A0A134C1C3	Phage late control D protein	NA
UHGV-0231454_14	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-0231454_14	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0231454_14	COG	COG3500	NA	NA
UHGV-0231454_14	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0231454_15	PHROG	phrog_46	tail protein	tail
UHGV-0231454_15	UniRef90	UniRef90_A0A134C180	Phage Tail Protein X	NA
UHGV-0231454_15	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-0231454_15	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0231454_15	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0231454_15	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0231454_16	PHROG	phrog_18863	NA	unknown function
UHGV-0231454_16	eggNOG-mapper	861450.HMPREF0080_02057	tape measure	NA
UHGV-0231454_16	COG	COG4805	NA	NA
UHGV-0231454_17	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0231454_17	UniRef90	UniRef90_J4TSA4	Mu-like prophage FluMu protein gp41	NA
UHGV-0231454_17	eggNOG-mapper	936573.HMPREF1147_1728	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0231454_17	Structural annotation	PF10109	NA	NA
UHGV-0231454_18	KOfam	K06908	NA	NA
UHGV-0231454_18	PHROG	phrog_55	head closure	connector
UHGV-0231454_18	UniRef90	UniRef90_A0A134CAG3	Phage tail tube protein FII	NA
UHGV-0231454_18	eggNOG-mapper	1064535.MELS_1103	tail tube protein	NA
UHGV-0231454_18	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0231454_18	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0231454_18	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0231454_19	KOfam	K06907	NA	NA
UHGV-0231454_19	PHROG	phrog_23	tail sheath	tail
UHGV-0231454_19	UniRef90	UniRef90_A0A811GKC4	Prophage major tail sheath protein	NA
UHGV-0231454_19	eggNOG-mapper	1064535.MELS_1102	COG3497 Phage tail sheath protein FI	NA
UHGV-0231454_19	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0231454_19	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0231454_21	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0231454_21	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-0231454_21	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0231454_22	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0231454_22	UniRef90	UniRef90_UPI001C063072	phage tail protein	NA
UHGV-0231454_22	eggNOG-mapper	1273103.NM10_02237	Prophage minor tail protein Z (GPZ)	NA
UHGV-0231454_22	Structural annotation	PF06763	NA	NA
UHGV-0231454_23	PHROG	phrog_2551	minor tail protein	tail
UHGV-0231454_23	UniRef90	UniRef90_A0A127SL33	ATP-binding sugar transporter from pro-phage	NA
UHGV-0231454_23	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-0231454_23	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0231454_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0231454_25	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-0231454_25	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-0231454_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0231454_25	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0231454_26	PHROG	phrog_49	head decoration	head and packaging
UHGV-0231454_26	UniRef90	UniRef90_UPI000F8CEB9D	head decoration protein	NA
UHGV-0231454_26	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-0231454_26	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0231454_26	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0231454_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0231454_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0231454_27	UniRef90	UniRef90_A0A811GJI8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0231454_27	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0231454_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0231454_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0231454_27	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0231454_28	PHROG	phrog_21	portal protein	head and packaging
UHGV-0231454_28	UniRef90	UniRef90_A0A134CAF6	Phage portal protein, lambda family (Fragment)	NA
UHGV-0231454_28	eggNOG-mapper	1064535.MELS_1093	Phage portal protein	NA
UHGV-0231454_28	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0231454_28	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0231454_28	COG	COG5511	Phage capsid protein	NA
UHGV-0231454_28	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0231454_29	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0231454_29	UniRef90	UniRef90_UPI0019D0AF1B	NA	NA
UHGV-0231454_29	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-0231454_29	Pfam	PF19645	NA	DUF6148
UHGV-0231454_29	Structural annotation	PF19645	NA	NA
UHGV-0231454_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0231454_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0231454_30	UniRef90	UniRef90_A0A134CAE4	Phage terminase large subunit (Fragment)	NA
UHGV-0231454_30	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0231454_30	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0231454_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0231454_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0231454_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0231454_30	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0231454_30	Structural annotation	PF20454, PF05876, PF05203, MF_04144, MF_01420, NF005852, NF033889, COG5525, COG1372	NA	NA
UHGV-0231454_31	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0231454_31	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0231454_31	UniRef90	UniRef90_A0A316DDI3	Phage terminase Nu1 subunit (DNA packaging protein)	NA
UHGV-0231454_31	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0231454_31	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0231454_31	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0231454_33	UniRef90	UniRef90_A0A6N2ZRY1	HNH endonuclease	NA
UHGV-0231454_33	eggNOG-mapper	1123489.AUAN01000010_gene369	endonuclease activity	NA
UHGV-0231454_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0231454_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0231454_33	Structural annotation	COG1403	NA	NA
UHGV-0231454_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0231454_34	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0231454_34	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0231454_34	Pfam	PF07374	NA	DUF1492
UHGV-0231454_34	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0231454_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0231454_35	UniRef90	UniRef90_UPI001F1C005B	NA	NA
UHGV-0231454_35	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0231454_35	Pfam	PF14359	NA	DUF4406
UHGV-0231454_35	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0231454_38	UniRef90	UniRef90_D2MZA6	Site-specific DNA-methyltransferase, putative	NA
UHGV-0231454_38	eggNOG-mapper	1423807.BACO01000050_gene1448	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0231454_38	COG	COG0863	DNA modification methylase	NA
UHGV-0231454_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0231454_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0231454_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0231454_42	UniRef90	UniRef90_A0A6N2ZNP1	Bro-N domain-containing protein	NA
UHGV-0231454_42	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0231454_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0231454_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0231454_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0231454_42	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0231454_43	UniRef90	UniRef90_UPI0018992993	helix-turn-helix domain-containing protein	NA
UHGV-0231454_43	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0231454_43	Structural annotation	NF040595	NA	NA
UHGV-0231454_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0231454_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0231454_45	UniRef90	UniRef90_UPI00098A2438	single-stranded DNA-binding protein	NA
UHGV-0231454_45	eggNOG-mapper	448385.sce2625	single-stranded DNA binding	NA
UHGV-0231454_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0231454_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0231454_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0231454_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0231454_45	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0231454_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0231454_46	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0231454_46	eggNOG-mapper	883156.HMPREF9282_01224	NA	NA
UHGV-0231454_46	Structural annotation	PF21578	NA	NA
UHGV-0231454_49	UniRef90	UniRef90_D6KLD6	Putative DNA binding domain, excisionase family	NA
UHGV-0231454_49	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-0231454_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0231454_49	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0231454_50	eggNOG-mapper	1423775.BAMN01000014_gene788	NA	NA
UHGV-0231454_50	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-0231454_52	PHROG	phrog_1090	NA	unknown function
UHGV-0231454_52	UniRef90	UniRef90_A0A4U9YD42	CRISPR associated protein Cas2	NA
UHGV-0231454_52	eggNOG-mapper	290402.Cbei_4995	NA	NA
UHGV-0231454_52	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0231454_54	UniRef90	UniRef90_A0A496P955	NA	NA
UHGV-0231454_54	eggNOG-mapper	1273103.NM10_03001	NA	NA
UHGV-0231454_54	Pfam	PF05339	NA	DUF739
UHGV-0231454_54	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0231454_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0231454_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0231454_55	UniRef90	UniRef90_A0A496PAE8	XRE family transcriptional regulator	NA
UHGV-0231454_55	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0231454_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0231454_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0231454_55	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0231454_56	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0231454_56	UniRef90	UniRef90_A0A496P951	Abi family protein	NA
UHGV-0231454_56	eggNOG-mapper	397288.C806_00111	Abi-like protein	NA
UHGV-0231454_56	PADLOC	AbiD	AbiD	Abi
UHGV-0231454_56	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0231454_56	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0231454_56	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0231454_57	PHROG	phrog_20936	NA	unknown function
UHGV-0231454_57	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-0231454_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0231454_57	Structural annotation	PF06114	NA	NA
UHGV-0231454_58	eggNOG-mapper	1122217.KB899580_gene1657	NA	NA
UHGV-0231454_58	Structural annotation	PF16747	NA	NA