UHGV-0231535

Genome information

Genome length 31,192 bps

CDS count 46

Completeness 77.21% (medium-quality)

geNomad score 0.9304

Prediction confidence Confident

Genome information
Genome ID	UHGV-0231535
vOTU ID	vOTU-031251
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS147346_a1_ct67804_vs01@Caudovirales__sp._ct1lb13@linear
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9304
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.91
Jumbo phage	No

Genome content
Genome length	31,192 bps
GC content	48.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.12%
Average CDS length	614.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0231535_1	PHROG	phrog_1960	NA	unknown function
UHGV-0231535_1	Pfam	PF08861	NA	DUF1828
UHGV-0231535_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0231535_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0231535_4	UniRef90	UniRef90_F3QJB3	Peptidase S24-like protein	NA
UHGV-0231535_4	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-0231535_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0231535_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0231535_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0231535_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0231535_5	UniRef90	UniRef90_UPI001CC6D725	helix-turn-helix domain-containing protein	NA
UHGV-0231535_5	eggNOG-mapper	765910.MARPU_05625	NA	NA
UHGV-0231535_5	Structural annotation	PF15943, NF007282	NA	NA
UHGV-0231535_6	PHROG	phrog_25711	NA	unknown function
UHGV-0231535_6	UniRef90	UniRef90_F3QJB6	Conserved domain protein	NA
UHGV-0231535_6	eggNOG-mapper	469610.HMPREF0189_01095	NA	NA
UHGV-0231535_6	Structural annotation	PF09681, TIGR01714, COG1675	NA	NA
UHGV-0231535_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0231535_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0231535_7	UniRef90	UniRef90_D9Y6E1	IstB-like ATP-binding protein	NA
UHGV-0231535_7	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-0231535_7	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0231535_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0231535_7	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0231535_9	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-0231535_10	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0231535_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0231535_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0231535_13	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-0231535_13	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0231535_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0231535_13	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0231535_13	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0231535_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0231535_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0231535_14	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0231535_14	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0231535_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0231535_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0231535_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0231535_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0231535_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0231535_15	UniRef90	UniRef90_A0A6L6YJD1	Phage portal protein	NA
UHGV-0231535_15	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0231535_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0231535_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0231535_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0231535_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0231535_16	KOfam	K06904	NA	NA
UHGV-0231535_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0231535_16	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-0231535_16	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0231535_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0231535_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0231535_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0231535_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0231535_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0231535_17	UniRef90	UniRef90_A0A6L6YGI2	Phage major capsid protein	NA
UHGV-0231535_17	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0231535_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0231535_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0231535_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0231535_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0231535_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0231535_19	UniRef90	UniRef90_UPI0003B9D6E3	head-tail connector protein	NA
UHGV-0231535_19	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-0231535_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0231535_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0231535_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0231535_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0231535_20	UniRef90	UniRef90_UPI000534BE46	phage head closure protein	NA
UHGV-0231535_20	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0231535_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0231535_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0231535_21	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0231535_21	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0231535_21	Structural annotation	TIGR01725	NA	NA
UHGV-0231535_22	PHROG	phrog_209	portal protein	head and packaging
UHGV-0231535_22	UniRef90	UniRef90_A0A087KRM1	Putative transposon protein	NA
UHGV-0231535_22	eggNOG-mapper	273526.SMDB11_2602	NA	NA
UHGV-0231535_22	Structural annotation	PF09646	NA	NA
UHGV-0231535_23	PHROG	phrog_165	tail sheath	tail
UHGV-0231535_23	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0231535_23	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0231535_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0231535_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0231535_23	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0231535_23	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0231535_24	PHROG	phrog_185	tail tube protein	tail
UHGV-0231535_24	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0231535_24	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0231535_24	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0231535_24	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0231535_25	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0231535_26	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0231535_26	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0231535_26	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0231535_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0231535_26	COG	COG5412	Phage-related protein	NA
UHGV-0231535_26	Structural annotation	TIGR01760	NA	NA
UHGV-0231535_27	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0231535_27	UniRef90	UniRef90_A0A6L6YM41	DNA_circ_N domain-containing protein (Fragment)	NA
UHGV-0231535_27	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0231535_27	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0231535_27	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0231535_27	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0231535_29	PHROG	phrog_177	tail protein	tail
UHGV-0231535_29	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0231535_29	eggNOG-mapper	1042876.PPS_1262	tail protein	NA
UHGV-0231535_29	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0231535_29	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0231535_29	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0231535_31	UniRef90	UniRef90_A0A3D3SHB9	Baseplate assembly protein (Fragment)	NA
UHGV-0231535_31	eggNOG-mapper	42565.FP66_09895	Bacteriophage Mu Gp45 protein	NA
UHGV-0231535_31	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0231535_31	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0231535_31	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0231535_31	COG	COG4384	NA	NA
UHGV-0231535_31	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0231535_32	PHROG	phrog_180	tail protein	tail
UHGV-0231535_32	UniRef90	UniRef90_A0A8B6X3R6	phage GP46 family protein	NA
UHGV-0231535_32	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0231535_32	Pfam	PF07409	NA	GP46
UHGV-0231535_32	COG	COG4381	NA	NA
UHGV-0231535_32	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0231535_33	PHROG	phrog_6	baseplate protein	tail
UHGV-0231535_33	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0231535_33	eggNOG-mapper	690850.Desaf_0706	Baseplate J-like protein	NA
UHGV-0231535_33	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0231535_33	COG	COG3299	NA	NA
UHGV-0231535_33	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0231535_34	PHROG	phrog_203	tail protein	tail
UHGV-0231535_34	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-0231535_34	eggNOG-mapper	1268068.PG5_42230	NA	NA
UHGV-0231535_34	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0231535_34	COG	COG3778	NA	NA
UHGV-0231535_34	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0231535_35	PHROG	phrog_19618	tail collar protein	tail
UHGV-0231535_35	UniRef90	UniRef90_A0A6L6YMH3	Collar domain-containing protein	NA
UHGV-0231535_35	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0231535_35	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0231535_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0231535_35	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0231535_36	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0231535_36	COG	COG4675	Phage tail collar domain	NA
UHGV-0231535_37	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0231535_37	UniRef90	UniRef90_R5EDB9	Putative cell wall protein DAN4	NA
UHGV-0231535_37	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0231535_37	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0231535_37	Structural annotation	PF16778	NA	NA
UHGV-0231535_38	Structural annotation	PF14879, NF033147	NA	NA
UHGV-0231535_39	eggNOG-mapper	469610.HMPREF0189_02346	NA	NA
UHGV-0231535_39	Structural annotation	PF17065	NA	NA
UHGV-0231535_41	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0231535_43	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0231535_43	PHROG	phrog_7	endolysin	lysis
UHGV-0231535_43	UniRef90	UniRef90_A0A5B3FP35	Lysozyme	NA
UHGV-0231535_43	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-0231535_43	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0231535_43	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0231535_43	Structural annotation	PF00959, MF_04110, COG3772	NA	NA