UHGV-0233344

Genome information

vOTU vOTU-022053

Genome length 22,977 bps

CDS count 29

Completeness 54.51% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0233344
vOTU ID	vOTU-022053
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SRS149784_a1_ct26076_vs1@Siphoviridae__sp._ctJOc1
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	0
Jumbo phage	No

Genome content
Genome length	22,977 bps
GC content	41.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.50%
Average CDS length	734.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0233344_1	KOfam	K07497	K07497; putative transposase	NA
UHGV-0233344_1	PHROG	phrog_157	transposase	integration and excision
UHGV-0233344_1	UniRef90	UniRef90_A0A396AC74	IS3 family transposase (Fragment)	NA
UHGV-0233344_1	eggNOG-mapper	622312.ROSEINA2194_03561	PFAM Integrase catalytic region	NA
UHGV-0233344_1	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0233344_1	Pfam	PF00665	Integrase core domain	rve
UHGV-0233344_1	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0233344_1	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0233344_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0233344_2	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0233344_2	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-0233344_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0233344_2	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0233344_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0233344_4	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0233344_4	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0233344_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0233344_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0233344_6	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0233344_6	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0233344_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0233344_6	Structural annotation	PF11114	NA	NA
UHGV-0233344_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0233344_7	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0233344_7	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0233344_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0233344_7	COG	COG2369	NA	NA
UHGV-0233344_7	Structural annotation	PF06152	NA	NA
UHGV-0233344_9	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0233344_9	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0233344_9	eggNOG-mapper	1123263.AUKY01000096_gene1821	NA	NA
UHGV-0233344_10	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0233344_11	PHROG	phrog_247	major head protein	head and packaging
UHGV-0233344_11	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0233344_11	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0233344_11	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0233344_11	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0233344_11	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0233344_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0233344_12	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0233344_13	PHROG	phrog_3366	NA	unknown function
UHGV-0233344_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0233344_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0233344_14	PHROG	phrog_3266	tail completion	connector
UHGV-0233344_14	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0233344_14	Structural annotation	PF12691	NA	NA
UHGV-0233344_15	PHROG	phrog_3099	NA	unknown function
UHGV-0233344_15	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0233344_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0233344_16	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0233344_16	Structural annotation	PF10666	NA	NA
UHGV-0233344_17	PHROG	phrog_706	NA	unknown function
UHGV-0233344_17	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0233344_17	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0233344_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0233344_17	Structural annotation	PF06854	NA	NA
UHGV-0233344_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0233344_18	UniRef90	UniRef90_A0A1C6CG40	Phage-related protein	NA
UHGV-0233344_18	eggNOG-mapper	1298920.KI911353_gene2068	domain protein	NA
UHGV-0233344_18	COG	COG1511	NA	NA
UHGV-0233344_19	PHROG	phrog_1194	NA	unknown function
UHGV-0233344_19	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0233344_19	Pfam	PF20458	NA	DUF6711
UHGV-0233344_19	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0233344_20	PHROG	phrog_18190	NA	unknown function
UHGV-0233344_20	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0233344_20	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0233344_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0233344_20	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0233344_21	PHROG	phrog_17196	kinase	other
UHGV-0233344_21	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0233344_21	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0233344_22	Structural annotation	PF02839	NA	NA
UHGV-0233344_23	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0233344_24	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0233344_24	Structural annotation	NF040910	NA	NA
UHGV-0233344_26	eggNOG-mapper	397291.C804_01089	NA	NA
UHGV-0233344_26	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0233344_27	PHROG	phrog_4105	NA	unknown function
UHGV-0233344_28	KOfam	K07486	K07486; transposase	NA
UHGV-0233344_28	PHROG	phrog_2199	transposase	integration and excision
UHGV-0233344_28	UniRef90	UniRef90_U2PJW0	Transposase	NA
UHGV-0233344_28	eggNOG-mapper	1256908.HMPREF0373_00500	Transposase IS116/IS110/IS902 family	NA
UHGV-0233344_28	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0233344_28	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0233344_28	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0233344_28	COG	COG3547	Transposase	NA
UHGV-0233344_28	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0233344_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0233344_29	PHROG	phrog_291	endolysin	lysis
UHGV-0233344_29	UniRef90	UniRef90_A0A3E4YDV2	Cell wall-binding protein	NA
UHGV-0233344_29	eggNOG-mapper	658655.HMPREF0988_01786	Glycosyl hydrolase, family 25	NA
UHGV-0233344_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0233344_29	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0233344_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA