UHGV-0237689

Genome information

Genome length 24,468 bps

CDS count 34

Completeness 63.17% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0237689
vOTU ID	vOTU-031305
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR3466404_119_20946_round347~1486099
BioSample	SAMN09260176
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.51
Jumbo phage	No

Genome content
Genome length	24,468 bps
GC content	32.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	94.61%
Average CDS length	682.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0237689_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0237689_1	PHROG	phrog_435	endolysin	lysis
UHGV-0237689_1	UniRef90	UniRef90_A0A316M1Z0	SH3b domain-containing protein	NA
UHGV-0237689_1	eggNOG-mapper	999411.HMPREF1092_01800	Ami_3	NA
UHGV-0237689_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0237689_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0237689_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0237689_1	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0237689_2	PHROG	phrog_20258	NA	unknown function
UHGV-0237689_2	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-0237689_3	PHROG	phrog_1863	NA	unknown function
UHGV-0237689_3	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-0237689_4	UniRef90	UniRef90_A0A316MJC0	XkdX family protein	NA
UHGV-0237689_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0237689_8	PHROG	phrog_38707	NA	unknown function
UHGV-0237689_8	UniRef90	UniRef90_UPI0003F7D7DC	tail fiber protein	NA
UHGV-0237689_8	eggNOG-mapper	1499683.CCFF01000017_gene2561	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0237689_8	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0237689_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0237689_9	UniRef90	UniRef90_A0A1H0M958	Collagen triple helix repeat-containing protein	NA
UHGV-0237689_9	eggNOG-mapper	235909.GK0542	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0237689_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0237689_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-0237689_10	UniRef90	UniRef90_A0A0J8G1G6	Phage-like protein	NA
UHGV-0237689_10	eggNOG-mapper	235909.GK0541	NA	NA
UHGV-0237689_10	Structural annotation	PF21567	NA	NA
UHGV-0237689_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0237689_11	UniRef90	UniRef90_UPI001178B202	phage tail family protein	NA
UHGV-0237689_11	eggNOG-mapper	1209989.TepiRe1_2592	PFAM Phage tail protein	NA
UHGV-0237689_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0237689_11	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0237689_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0237689_12	UniRef90	UniRef90_A0A316MAP1	Phage tail tape measure protein	NA
UHGV-0237689_12	eggNOG-mapper	195103.CPF_1576	tail tape measure protein	NA
UHGV-0237689_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0237689_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0237689_12	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0237689_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0237689_13	Structural annotation	PF12363	NA	NA
UHGV-0237689_14	PHROG	phrog_88	major tail protein	tail
UHGV-0237689_14	UniRef90	UniRef90_UPI001898B797	phage tail protein	NA
UHGV-0237689_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0237689_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0237689_15	PHROG	phrog_78	tail terminator	connector
UHGV-0237689_15	UniRef90	UniRef90_UPI0018A9EC04	prohead protease	NA
UHGV-0237689_15	eggNOG-mapper	536232.CLM_2050	NA	NA
UHGV-0237689_15	Structural annotation	PF05657	NA	NA
UHGV-0237689_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0237689_16	UniRef90	UniRef90_UPI001C0C2D97	HK97 gp10 family phage protein	NA
UHGV-0237689_16	eggNOG-mapper	536232.CLM_2051	NA	NA
UHGV-0237689_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0237689_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0237689_16	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0237689_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0237689_17	UniRef90	UniRef90_A0A316MAT1	Head-tail adaptor protein	NA
UHGV-0237689_17	eggNOG-mapper	1567011.A0A0A7RUH8_9VIRU	Phage head-tail joining protein	NA
UHGV-0237689_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0237689_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0237689_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0237689_18	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-0237689_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0237689_19	UniRef90	UniRef90_A0A316MA62	Phage major capsid protein	NA
UHGV-0237689_19	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-0237689_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0237689_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0237689_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0237689_19	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0237689_20	KOfam	K06904	NA	NA
UHGV-0237689_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0237689_20	UniRef90	UniRef90_A0A316MBP5	HK97 family phage prohead protease	NA
UHGV-0237689_20	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-0237689_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0237689_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0237689_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0237689_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0237689_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0237689_21	UniRef90	UniRef90_A0A316MSJ3	Portal protein	NA
UHGV-0237689_21	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0237689_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0237689_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0237689_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0237689_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0237689_22	UniRef90	UniRef90_A0A316ME49	Terminase	NA
UHGV-0237689_22	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0237689_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0237689_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0237689_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0237689_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0237689_23	PHROG	phrog_1066	NA	unknown function
UHGV-0237689_23	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-0237689_23	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0237689_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0237689_24	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0237689_24	UniRef90	UniRef90_A0A316MC43	HNH endonuclease	NA
UHGV-0237689_24	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0237689_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0237689_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0237689_24	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0237689_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0237689_25	UniRef90	UniRef90_A0A316MA76	Transposase	NA
UHGV-0237689_25	eggNOG-mapper	457396.CSBG_01043	transposase activity	NA
UHGV-0237689_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0237689_25	Structural annotation	PF07141	NA	NA
UHGV-0237689_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0237689_26	PHROG	phrog_216	integrase	integration and excision
UHGV-0237689_26	UniRef90	UniRef90_A0A316MAM1	Site-specific integrase	NA
UHGV-0237689_26	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0237689_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0237689_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0237689_26	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0237689_27	PHROG	phrog_15827	NA	unknown function
UHGV-0237689_27	UniRef90	UniRef90_A0A0C3M8L1	Zn-finger containing protein	NA
UHGV-0237689_27	eggNOG-mapper	1211817.CCAT010000007_gene1045	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0237689_27	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0237689_27	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0237689_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0237689_28	UniRef90	UniRef90_A0A0A7RTX6	Siderophore-interacting protein	NA
UHGV-0237689_28	eggNOG-mapper	1540257.JQMW01000013_gene751	sigma factor activity	NA
UHGV-0237689_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0237689_28	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0237689_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0237689_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0237689_29	UniRef90	UniRef90_A0A316MFU4	DNA adenine methylase	NA
UHGV-0237689_29	eggNOG-mapper	1280692.AUJL01000025_gene2087	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0237689_29	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0237689_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0237689_29	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0237689_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-0237689_29	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0237689_31	PHROG	phrog_874	NA	unknown function
UHGV-0237689_31	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0237689_31	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA