UHGV-0243635

Genome information

Genome length 20,337 bps

CDS count 29

Completeness 61.31% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0243635
vOTU ID	vOTU-031367
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1398105_141_16528_round347~2678871
BioSample	SAMN07795010
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.65
Jumbo phage	No

Genome content
Genome length	20,337 bps
GC content	57.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.65%
Average CDS length	682.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0243635_1	UniRef90	UniRef90_A0A1Y4L0X4	Holin	NA
UHGV-0243635_1	eggNOG-mapper	1203606.HMPREF1526_01359	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0243635_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0243635_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0243635_2	PHROG	phrog_20274	NA	unknown function
UHGV-0243635_2	UniRef90	UniRef90_UPI00041DFB96	membrane protein	NA
UHGV-0243635_2	eggNOG-mapper	1203606.HMPREF1526_01358	Putative ABC-transporter type IV	NA
UHGV-0243635_2	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0243635_2	COG	COG4905	NA	NA
UHGV-0243635_2	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0243635_3	eggNOG-mapper	1203606.HMPREF1526_01357	NA	NA
UHGV-0243635_3	Structural annotation	PF14301	NA	NA
UHGV-0243635_4	KOfam	K06882	NA	NA
UHGV-0243635_4	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0243635_4	UniRef90	UniRef90_UPI0006884E33	fibronectin type III domain-containing protein	NA
UHGV-0243635_4	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-0243635_4	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0243635_4	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0243635_5	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0243635_5	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0243635_5	eggNOG-mapper	1203606.HMPREF1526_01355	NA	NA
UHGV-0243635_5	Structural annotation	PF12571	NA	NA
UHGV-0243635_6	PHROG	phrog_521	tail protein	tail
UHGV-0243635_6	UniRef90	UniRef90_UPI001C0CDBB4	NA	NA
UHGV-0243635_6	eggNOG-mapper	1203606.HMPREF1526_00341	NA	NA
UHGV-0243635_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0243635_6	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0243635_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0243635_7	UniRef90	UniRef90_R8W0F2	Baseplate_J domain-containing protein	NA
UHGV-0243635_7	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0243635_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0243635_7	COG	COG3299	NA	NA
UHGV-0243635_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0243635_8	UniRef90	UniRef90_UPI001C11145A	NA	NA
UHGV-0243635_8	eggNOG-mapper	1203606.HMPREF1526_01352	NA	NA
UHGV-0243635_8	Pfam	PF10934	NA	DUF2634
UHGV-0243635_8	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0243635_8	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0243635_9	Structural annotation	PF10844	NA	NA
UHGV-0243635_10	PHROG	phrog_400	tail protein	tail
UHGV-0243635_10	UniRef90	UniRef90_UPI000F63FB4A	CHAP domain-containing protein	NA
UHGV-0243635_10	eggNOG-mapper	1203606.HMPREF1526_01350	Late control gene D protein	NA
UHGV-0243635_10	COG	COG3500	NA	NA
UHGV-0243635_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0243635_11	PHROG	phrog_5184	NA	unknown function
UHGV-0243635_11	UniRef90	UniRef90_A0A6P1MGG2	Phage portal protein	NA
UHGV-0243635_11	eggNOG-mapper	1203606.HMPREF1526_01349	LysM domain	NA
UHGV-0243635_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0243635_11	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0243635_12	PHROG	phrog_19074	NA	unknown function
UHGV-0243635_12	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0243635_12	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0243635_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0243635_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0243635_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0243635_12	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0243635_14	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0243635_14	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0243635_15	PHROG	phrog_365	tail protein	tail
UHGV-0243635_15	UniRef90	UniRef90_A0A396QGP2	Terminase	NA
UHGV-0243635_15	eggNOG-mapper	1203606.HMPREF1526_01345	Phage tail tube protein	NA
UHGV-0243635_15	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0243635_15	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0243635_16	PHROG	phrog_1480	tail sheath	tail
UHGV-0243635_16	UniRef90	UniRef90_R8W0T6	Phage_sheath_1C domain-containing protein	NA
UHGV-0243635_16	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0243635_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0243635_16	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0243635_17	PHROG	phrog_525	NA	unknown function
UHGV-0243635_17	eggNOG-mapper	1203606.HMPREF1526_01343	NA	NA
UHGV-0243635_17	Pfam	PF20765	NA	DUF6838
UHGV-0243635_17	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0243635_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0243635_18	UniRef90	UniRef90_UPI000983FF43	HK97 gp10 family phage protein	NA
UHGV-0243635_18	eggNOG-mapper	1203606.HMPREF1526_01342	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0243635_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0243635_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0243635_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0243635_19	UniRef90	UniRef90_UPI0013DDBA4C	head-tail adaptor protein	NA
UHGV-0243635_19	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0243635_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0243635_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0243635_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0243635_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0243635_20	UniRef90	UniRef90_UPI000F643601	head-tail connector protein	NA
UHGV-0243635_20	eggNOG-mapper	272943.RSP_6247	DNA packaging	NA
UHGV-0243635_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0243635_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0243635_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0243635_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0243635_21	UniRef90	UniRef90_R8W0T1	HK97 family phage major capsid protein	NA
UHGV-0243635_21	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0243635_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0243635_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0243635_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0243635_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0243635_22	KOfam	K06904	NA	NA
UHGV-0243635_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0243635_22	UniRef90	UniRef90_R8W0D5	HK97 family phage prohead protease	NA
UHGV-0243635_22	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0243635_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0243635_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0243635_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0243635_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0243635_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0243635_23	UniRef90	UniRef90_R8W577	HK97 family phage portal protein	NA
UHGV-0243635_23	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0243635_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0243635_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0243635_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0243635_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0243635_24	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-0243635_24	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0243635_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0243635_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0243635_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0243635_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0243635_26	PHROG	phrog_1066	NA	unknown function
UHGV-0243635_26	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0243635_26	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0243635_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0243635_27	UniRef90	UniRef90_R9TNN2	HNH domain-containing protein	NA
UHGV-0243635_27	eggNOG-mapper	1203606.HMPREF1526_01332	HNH nucleases	NA
UHGV-0243635_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0243635_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0243635_29	eggNOG-mapper	1203606.HMPREF1526_01330	NA	NA
UHGV-0243635_29	Structural annotation	PF01446, NF041486	NA	NA