UHGV-0243862

Genome information

Genome length 38,471 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0243862
vOTU ID	vOTU-007245
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_250_round8-12~3257421
BioSample	SAMD00011170
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.56
Jumbo phage	No

Genome content
Genome length	38,471 bps
GC content	51.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.35%
Average CDS length	585.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0243862_1	eggNOG-mapper	1131462.DCF50_p1798	NA	NA
UHGV-0243862_3	PHROG	phrog_1129	holin	lysis
UHGV-0243862_3	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0243862_3	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0243862_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0243862_3	Structural annotation	PF06946	NA	NA
UHGV-0243862_4	PHROG	phrog_4105	NA	unknown function
UHGV-0243862_4	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0243862_5	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0243862_5	UniRef90	UniRef90_G9RZC7	Peptidase_M23 domain-containing protein	NA
UHGV-0243862_5	eggNOG-mapper	665956.HMPREF1032_01628	NA	NA
UHGV-0243862_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0243862_5	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0243862_6	Structural annotation	PF11514	NA	NA
UHGV-0243862_7	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0243862_8	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0243862_9	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0243862_9	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0243862_9	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0243862_10	Structural annotation	PF20387	NA	NA
UHGV-0243862_11	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0243862_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-0243862_12	UniRef90	UniRef90_A0A3A9JXK2	P22 coat protein-protein 5 domain protein	NA
UHGV-0243862_12	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0243862_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0243862_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0243862_15	eggNOG-mapper	665956.HMPREF1032_03886	NA	NA
UHGV-0243862_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0243862_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0243862_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0243862_17	UniRef90	UniRef90_UPI0019677368	phage terminase large subunit	NA
UHGV-0243862_17	eggNOG-mapper	665956.HMPREF1032_03884	Terminase-like family	NA
UHGV-0243862_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0243862_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0243862_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0243862_18	UniRef90	UniRef90_A0A0W7TNA7	NA	NA
UHGV-0243862_18	eggNOG-mapper	272630.MexAM1_META1p3985	NA	NA
UHGV-0243862_18	Pfam	PF18932	NA	DUF5681
UHGV-0243862_19	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0243862_20	PHROG	phrog_25027	NA	unknown function
UHGV-0243862_20	UniRef90	UniRef90_A0A1Y3RPR4	ArdcN domain-containing protein	NA
UHGV-0243862_20	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0243862_20	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0243862_20	Structural annotation	PF08401	NA	NA
UHGV-0243862_21	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0243862_21	eggNOG-mapper	397291.C804_05264	NA	NA
UHGV-0243862_21	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0243862_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0243862_24	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0243862_24	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0243862_26	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0243862_27	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0243862_29	PHROG	phrog_38832	NA	unknown function
UHGV-0243862_29	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0243862_29	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0243862_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0243862_30	UniRef90	UniRef90_A0A372V4B7	DNA cytosine methyltransferase	NA
UHGV-0243862_30	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0243862_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0243862_30	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0243862_31	UniRef90	UniRef90_Q9MBW9	ORF65	NA
UHGV-0243862_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0243862_32	UniRef90	UniRef90_UPI001D08B1AD	Lar family restriction alleviation protein	NA
UHGV-0243862_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0243862_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0243862_33	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0243862_33	UniRef90	UniRef90_A0A372V642	Adenine methyltransferase	NA
UHGV-0243862_33	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0243862_33	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0243862_33	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0243862_36	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0243862_36	UniRef90	UniRef90_A0A372V3W4	NA	NA
UHGV-0243862_36	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0243862_36	Pfam	PF06048	NA	DUF927
UHGV-0243862_36	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0243862_36	COG	COG5519	NA	NA
UHGV-0243862_36	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0243862_37	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0243862_37	PHROG	phrog_11992	NA	unknown function
UHGV-0243862_37	UniRef90	UniRef90_A0A372V3Z0	ZnF_CHCC domain-containing protein	NA
UHGV-0243862_37	eggNOG-mapper	1007096.BAGW01000023_gene150	CHC2 zinc finger	NA
UHGV-0243862_37	PADLOC	drt-cluster192	DRT	DRT
UHGV-0243862_37	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0243862_37	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0243862_37	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0243862_38	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0243862_38	UniRef90	UniRef90_A0A372V4F7	ERCC4 domain-containing protein	NA
UHGV-0243862_38	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0243862_38	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0243862_38	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0243862_38	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0243862_39	PHROG	phrog_18107	NA	unknown function
UHGV-0243862_39	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0243862_39	Structural annotation	PF05037	NA	NA
UHGV-0243862_40	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0243862_40	UniRef90	UniRef90_A0A372V4A8	ATP-binding protein	NA
UHGV-0243862_40	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0243862_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0243862_41	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0243862_46	AcrCatalog	cluster_35670	NA	NA
UHGV-0243862_46	Structural annotation	PF11998	NA	NA
UHGV-0243862_52	UniRef90	UniRef90_A0A316PLZ6	XRE family transcriptional regulator	NA
UHGV-0243862_52	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0243862_52	Structural annotation	TIGR03070	NA	NA
UHGV-0243862_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0243862_53	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0243862_53	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0243862_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0243862_53	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0243862_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0243862_54	PHROG	phrog_87	metallo-protease	other
UHGV-0243862_54	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0243862_54	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0243862_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0243862_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0243862_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0243862_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0243862_55	UniRef90	UniRef90_UPI00130D873A	Abi family protein	NA
UHGV-0243862_55	eggNOG-mapper	469617.FUAG_02687	Abi-like protein	NA
UHGV-0243862_55	PADLOC	AbiD	AbiD	Abi
UHGV-0243862_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0243862_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0243862_55	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0243862_56	KOfam	K14059	int; integrase	NA
UHGV-0243862_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0243862_56	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0243862_56	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0243862_56	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0243862_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0243862_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0243862_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0243862_57	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0243862_59	eggNOG-mapper	1131462.DCF50_p1798	NA	NA