UHGV-0244496

Genome information

Genome length 42,834 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0244496
vOTU ID	vOTU-011758
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR2565968_141_1209_round8-12~3231827
BioSample	SAMN10919956
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	37
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	85.32
Jumbo phage	No

Genome content
Genome length	42,834 bps
GC content	34.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.57%
Average CDS length	665.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0244496_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-0244496_1	UniRef90	UniRef90_E2YSB9	BppU_IgG domain-containing protein	NA
UHGV-0244496_1	eggNOG-mapper	226185.EF_0351	NA	NA
UHGV-0244496_1	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0244496_2	PHROG	phrog_1665	NA	unknown function
UHGV-0244496_2	UniRef90	UniRef90_UPI0001B2E2BA	pyocin knob domain-containing protein	NA
UHGV-0244496_2	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA
UHGV-0244496_3	PHROG	phrog_1863	NA	unknown function
UHGV-0244496_3	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-0244496_4	PHROG	phrog_881	holin	lysis
UHGV-0244496_4	UniRef90	UniRef90_A0A0M2AAC9	Holin	NA
UHGV-0244496_4	eggNOG-mapper	1201292.DR75_1493	Putative phage holin Dp-1	NA
UHGV-0244496_4	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0244496_4	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0244496_5	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0244496_5	PHROG	phrog_291	endolysin	lysis
UHGV-0244496_5	UniRef90	UniRef90_C9E2L1	Lysozyme	NA
UHGV-0244496_5	eggNOG-mapper	673837.D2IZV5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0244496_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0244496_5	Pfam	PF01476	LysM domain	LysM
UHGV-0244496_5	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0244496_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0244496_6	UniRef90	UniRef90_A0A8D9IKN5	Phage transcriptional regulator, RinA family	NA
UHGV-0244496_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0244496_7	PHROG	phrog_9205	NA	unknown function
UHGV-0244496_7	UniRef90	UniRef90_A0A1X3AID7	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0244496_7	eggNOG-mapper	663241.C9E2L3_9CAUD	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0244496_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0244496_7	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0244496_8	PHROG	phrog_9718	NA	unknown function
UHGV-0244496_8	UniRef90	UniRef90_A0A7H0FMS4	Glucosyltransferase domain-containing protein	NA
UHGV-0244496_8	eggNOG-mapper	1201292.DR75_1409	Glucosyl transferase GtrII	NA
UHGV-0244496_8	Pfam	PF14264	Glucosyl transferase GtrII	Glucos_trans_II
UHGV-0244496_9	PHROG	phrog_1904	endolysin; lysM motif	lysis
UHGV-0244496_9	UniRef90	UniRef90_A0A8I1FD32	NA	NA
UHGV-0244496_9	eggNOG-mapper	1201292.DR75_1486	LysM domain	NA
UHGV-0244496_9	Pfam	PF16308	NA	DUF4950
UHGV-0244496_9	COG	COG1388	LysM repeat	NA
UHGV-0244496_10	KOfam	K14059	int; integrase	NA
UHGV-0244496_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0244496_10	UniRef90	UniRef90_C9E2L6	Integrase	NA
UHGV-0244496_10	eggNOG-mapper	663241.C9E2L6_9CAUD	Phage integrase family	NA
UHGV-0244496_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0244496_10	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0244496_11	PHROG	phrog_806	NA	unknown function
UHGV-0244496_11	UniRef90	UniRef90_A0A6I6BJA1	Cell wall-binding protein	NA
UHGV-0244496_11	eggNOG-mapper	663241.C9E2L7_9CAUD	NA	NA
UHGV-0244496_11	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0244496_12	PHROG	phrog_3374	NA	unknown function
UHGV-0244496_12	eggNOG-mapper	663241.C9E2L8_9CAUD	NA	NA
UHGV-0244496_13	PHROG	phrog_5319	outer membrane protein	other
UHGV-0244496_14	PHROG	phrog_87	metallo-protease	other
UHGV-0244496_14	UniRef90	UniRef90_A0A097BY56	Toxin	NA
UHGV-0244496_14	eggNOG-mapper	663241.C9E2M0_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0244496_14	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0244496_14	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0244496_15	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0244496_15	UniRef90	UniRef90_C9E2M1	CI-like repressor	NA
UHGV-0244496_15	eggNOG-mapper	663241.C9E2M1_9CAUD	sequence-specific DNA binding	NA
UHGV-0244496_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0244496_15	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0244496_16	UniRef90	UniRef90_C9E2M2	Cro-like repressor	NA
UHGV-0244496_16	eggNOG-mapper	663241.C9E2M2_9CAUD	NA	NA
UHGV-0244496_16	Pfam	PF05339	NA	DUF739
UHGV-0244496_16	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0244496_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0244496_17	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0244496_17	UniRef90	UniRef90_C9E2M3	Antirepressor	NA
UHGV-0244496_17	eggNOG-mapper	663241.C9E2M3_9CAUD	DNA binding	NA
UHGV-0244496_17	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0244496_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0244496_17	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0244496_18	PHROG	phrog_904	excisionase	integration and excision
UHGV-0244496_18	UniRef90	UniRef90_K8E769	Protein	NA
UHGV-0244496_19	PHROG	phrog_1592	NA	unknown function
UHGV-0244496_20	PHROG	phrog_4384	NA	unknown function
UHGV-0244496_21	PHROG	phrog_5100	NA	unknown function
UHGV-0244496_22	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0244496_22	UniRef90	UniRef90_A0A2S7M5R4	Single-stranded DNA-binding protein	NA
UHGV-0244496_22	eggNOG-mapper	663241.C9E2M9_9CAUD	ERF superfamily	NA
UHGV-0244496_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-0244496_22	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0244496_23	PHROG	phrog_674	NA	unknown function
UHGV-0244496_23	UniRef90	UniRef90_UPI001CF35DC8	NA	NA
UHGV-0244496_23	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0244496_23	Pfam	PF07083	NA	DUF1351
UHGV-0244496_23	Structural annotation	PF07083	NA	NA
UHGV-0244496_24	PHROG	phrog_398	NA	unknown function
UHGV-0244496_24	UniRef90	UniRef90_UPI000330E66A	putative HNHc nuclease	NA
UHGV-0244496_24	eggNOG-mapper	663241.C9E2N1_9CAUD	Pfam:HNHc_6	NA
UHGV-0244496_24	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0244496_24	Structural annotation	PF16784	NA	NA
UHGV-0244496_25	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0244496_25	UniRef90	UniRef90_U6RYZ1	Phage replisome organizer protein	NA
UHGV-0244496_25	eggNOG-mapper	1158604.I591_00387	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0244496_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0244496_25	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0244496_25	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0244496_26	PHROG	phrog_10188	NA	unknown function
UHGV-0244496_26	eggNOG-mapper	1140001.I571_02092	NA	NA
UHGV-0244496_27	PHROG	phrog_5677	NA	unknown function
UHGV-0244496_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0244496_28	PHROG	phrog_5696	NA	unknown function
UHGV-0244496_28	UniRef90	UniRef90_A0A6I4HGJ7	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0244496_28	eggNOG-mapper	1118057.CAGX01000058_gene108	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0244496_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0244496_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0244496_28	Structural annotation	COG0286	NA	NA
UHGV-0244496_29	PHROG	phrog_98	NA	unknown function
UHGV-0244496_29	UniRef90	UniRef90_C9E2N7	YopX domain-containing protein	NA
UHGV-0244496_29	eggNOG-mapper	1486428.A0A097BY92_9CAUD	YopX protein	NA
UHGV-0244496_29	Pfam	PF09643	YopX protein	YopX
UHGV-0244496_29	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0244496_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0244496_30	PHROG	phrog_27394	NA	unknown function
UHGV-0244496_30	eggNOG-mapper	1140001.I571_01141	NA	NA
UHGV-0244496_33	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0244496_33	UniRef90	UniRef90_R3I0M3	ArpU family phage transcriptional regulator	NA
UHGV-0244496_33	eggNOG-mapper	768486.EHR_00690	NA	NA
UHGV-0244496_33	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0244496_33	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0244496_34	PHROG	phrog_11123	NA	unknown function
UHGV-0244496_34	UniRef90	UniRef90_A0A8I1JZH6	NA	NA
UHGV-0244496_34	eggNOG-mapper	1449338.JQLU01000005_gene3789	NA	NA
UHGV-0244496_34	PADLOC	KwaB_00010	NA	Kiwa
UHGV-0244496_34	Pfam	PF16162	Kiwa protein KwaB-like	KwaB
UHGV-0244496_34	Structural annotation	PF16162, NF041623	NA	NA
UHGV-0244496_35	PHROG	phrog_7312	NA	unknown function
UHGV-0244496_35	UniRef90	UniRef90_M9LB96	NADH:ubiquinone oxidoreductase	NA
UHGV-0244496_35	eggNOG-mapper	1449338.JQLU01000005_gene3790	NA	NA
UHGV-0244496_35	PADLOC	KwaA_00002	NA	Kiwa
UHGV-0244496_35	Structural annotation	NF041622	NA	NA
UHGV-0244496_36	PHROG	phrog_30332	NA	unknown function
UHGV-0244496_36	UniRef90	UniRef90_D2IZT2	Terminase small subunit	NA
UHGV-0244496_37	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0244496_37	UniRef90	UniRef90_UPI000F804DB2	phage terminase small subunit	NA
UHGV-0244496_37	eggNOG-mapper	673832.D2IYW0_9CAUD	DNA packaging	NA
UHGV-0244496_37	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0244496_37	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0244496_37	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0244496_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0244496_38	PHROG	phrog_5902	NA	unknown function
UHGV-0244496_38	UniRef90	UniRef90_E0HGD0	Terminase_3 domain-containing protein	NA
UHGV-0244496_38	eggNOG-mapper	663241.C9E2I7_9CAUD	NA	NA
UHGV-0244496_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0244496_38	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0244496_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0244496_39	UniRef90	UniRef90_R3KA66	SPP1 family phage portal protein	NA
UHGV-0244496_39	eggNOG-mapper	565664.EFXG_01159	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0244496_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0244496_39	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0244496_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0244496_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0244496_40	UniRef90	UniRef90_V7ZN52	Phage_Mu_F domain-containing protein	NA
UHGV-0244496_40	eggNOG-mapper	1486428.A0A097BY50_9CAUD	Phage Mu protein F like protein	NA
UHGV-0244496_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0244496_40	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0244496_40	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0244496_41	PHROG	phrog_1315	NA	unknown function
UHGV-0244496_41	eggNOG-mapper	1158609.I586_00080	NA	NA
UHGV-0244496_42	PHROG	phrog_9991	NA	unknown function
UHGV-0244496_43	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0244496_43	UniRef90	UniRef90_UPI001920622B	NA	NA
UHGV-0244496_43	eggNOG-mapper	565664.EFXG_01165	NA	NA
UHGV-0244496_43	Pfam	PF14265	NA	DUF4355
UHGV-0244496_43	Structural annotation	PF14265	NA	NA
UHGV-0244496_44	PHROG	phrog_909	major head protein	head and packaging
UHGV-0244496_44	UniRef90	UniRef90_A0A7U8FVR7	NA	NA
UHGV-0244496_44	eggNOG-mapper	663241.C9E2J4_9CAUD	NA	NA
UHGV-0244496_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-0244496_45	UniRef90	UniRef90_A0A7U8FUB5	NA	NA
UHGV-0244496_45	eggNOG-mapper	663241.C9E2J5_9CAUD	Phage major capsid protein E	NA
UHGV-0244496_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0244496_45	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0244496_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0244496_46	UniRef90	UniRef90_UPI001629F496	phage head-tail connector protein	NA
UHGV-0244496_46	eggNOG-mapper	1486428.A0A097BY55_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0244496_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0244496_46	Structural annotation	PF05135	NA	NA
UHGV-0244496_47	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0244496_47	UniRef90	UniRef90_Q38175	B3 protein (Fragment)	NA
UHGV-0244496_47	eggNOG-mapper	663241.C9E2J7_9CAUD	NA	NA
UHGV-0244496_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0244496_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0244496_48	UniRef90	UniRef90_R3KA60	HK97 gp10 family phage protein	NA
UHGV-0244496_48	eggNOG-mapper	1486428.A0A097BY98_9CAUD	exonuclease activity	NA
UHGV-0244496_48	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0244496_48	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0244496_49	PHROG	phrog_176	tail terminator	connector
UHGV-0244496_49	UniRef90	UniRef90_UPI001A8E49C4	phage capsid protein	NA
UHGV-0244496_49	eggNOG-mapper	663241.C9E2J9_9CAUD	NA	NA
UHGV-0244496_49	Structural annotation	PF11367	NA	NA
UHGV-0244496_50	PHROG	phrog_238	major tail protein	tail
UHGV-0244496_50	UniRef90	UniRef90_C9E2K0	Phage major tail protein	NA
UHGV-0244496_50	eggNOG-mapper	663241.C9E2K0_9CAUD	Phage major tail protein 2	NA
UHGV-0244496_50	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0244496_50	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0244496_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0244496_51	PHROG	phrog_341	major tail protein	tail
UHGV-0244496_51	UniRef90	UniRef90_UPI000A191C1D	phage tail protein	NA
UHGV-0244496_51	eggNOG-mapper	1486428.A0A097BY60_9CAUD	peptidase activity	NA
UHGV-0244496_51	Structural annotation	PF02368, MF_04116, TIGR04225, COG5492	NA	NA
UHGV-0244496_52	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0244496_52	UniRef90	UniRef90_UPI000B4C19E6	tail assembly chaperone	NA
UHGV-0244496_52	eggNOG-mapper	663241.C9E2K2_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-0244496_52	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0244496_52	Structural annotation	PF12363	NA	NA
UHGV-0244496_53	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0244496_53	eggNOG-mapper	1486428.A0A097BYA4_9CAUD	NA	NA
UHGV-0244496_54	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0244496_54	UniRef90	UniRef90_A0A097BYA1	Tapemeasure domain-containing protein	NA
UHGV-0244496_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0244496_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0244496_54	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0244496_55	PHROG	phrog_5163	minor tail protein	tail
UHGV-0244496_55	UniRef90	UniRef90_A0A097BY64	Tail protein	NA
UHGV-0244496_55	eggNOG-mapper	1486428.A0A097BY64_9CAUD	Phage tail protein	NA
UHGV-0244496_55	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0244496_55	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0244496_55	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0244496_56	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0244496_56	UniRef90	UniRef90_R3HYM9	Phage minor structural protein	NA
UHGV-0244496_56	eggNOG-mapper	1486428.A0A097BY65_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0244496_56	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0244496_56	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0244496_56	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0244496_57	PHROG	phrog_5381	NA	unknown function
UHGV-0244496_58	PHROG	phrog_5793	NA	unknown function
UHGV-0244496_58	UniRef90	UniRef90_A0A097BYA8	Glycerophosphodiester phosphodiesterase	NA
UHGV-0244496_58	eggNOG-mapper	226185.EF_1291	glycerophosphoryl diester phosphodiesterase	NA
UHGV-0244496_58	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0244496_59	PHROG	phrog_5793	NA	unknown function
UHGV-0244496_59	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA