UHGV-0251183

Genome information

Genome length 47,658 bps

CDS count 65

Completeness 64.42% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0251183
vOTU ID	vOTU-023746
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR3993001_141_169065_round8-12~1616197
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.85
Jumbo phage	No

Genome content
Genome length	47,658 bps
GC content	42.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.69%
Average CDS length	666.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0251183_1	PHROG	phrog_14770	NA	unknown function
UHGV-0251183_1	UniRef90	UniRef90_K1UH82	LPD38 domain-containing protein (Fragment)	NA
UHGV-0251183_1	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0251183_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0251183_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0251183_3	eggNOG-mapper	762968.HMPREF9441_00550	NA	NA
UHGV-0251183_4	PHROG	phrog_38431	NA	unknown function
UHGV-0251183_4	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0251183_4	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0251183_6	PHROG	phrog_28898	NA	unknown function
UHGV-0251183_6	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0251183_6	Structural annotation	PF10781	NA	NA
UHGV-0251183_7	PHROG	phrog_31654	NA	unknown function
UHGV-0251183_7	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0251183_8	PHROG	phrog_16490	NA	unknown function
UHGV-0251183_8	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0251183_8	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0251183_9	UniRef90	UniRef90_A0A414FMH0	MotA_ExbB domain-containing protein	NA
UHGV-0251183_9	eggNOG-mapper	1131812.JQMS01000001_gene2254	MotA/TolQ/ExbB proton channel family	NA
UHGV-0251183_9	PADLOC	ZorA2_00001	MotA/ExbB/TolQ	Zorya
UHGV-0251183_9	COG	COG0811	Biopolymer transport protein ExbB/TolQ	NA
UHGV-0251183_10	KOfam	K02557	motB; chemotaxis protein MotB	NA
UHGV-0251183_10	UniRef90	UniRef90_UPI001CC65896	OmpA family protein	NA
UHGV-0251183_10	eggNOG-mapper	1131812.JQMS01000001_gene2253	OmpA family	NA
UHGV-0251183_10	PADLOC	ZorB2_00001	MotB	Zorya
UHGV-0251183_10	Pfam	PF00691	OmpA family	OmpA
UHGV-0251183_10	COG	COG1360	Flagellar motor protein MotB	NA
UHGV-0251183_11	UniRef90	UniRef90_A0A5M5SNW5	HNHc domain-containing protein	NA
UHGV-0251183_11	eggNOG-mapper	575788.VS_1370	HNH nucleases	NA
UHGV-0251183_11	PADLOC	ZorE2_00003	HNH endonuclease	Zorya
UHGV-0251183_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0251183_11	Structural annotation	NF041791	NA	NA
UHGV-0251183_12	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0251183_12	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0251183_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0251183_12	Pfam	PF01522	Polysaccharide deacetylase	Polysacc_deac_1
UHGV-0251183_12	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-0251183_13	PHROG	phrog_13518	NA	unknown function
UHGV-0251183_13	Structural annotation	COG5456	NA	NA
UHGV-0251183_14	Structural annotation	PF17994	NA	NA
UHGV-0251183_15	Structural annotation	PF17212	NA	NA
UHGV-0251183_17	PHROG	phrog_26635	NA	unknown function
UHGV-0251183_17	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0251183_18	PHROG	phrog_22323	NA	unknown function
UHGV-0251183_18	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0251183_19	PHROG	phrog_156	portal protein	head and packaging
UHGV-0251183_19	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0251183_19	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0251183_21	Structural annotation	PF02368	NA	NA
UHGV-0251183_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0251183_24	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0251183_24	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0251183_24	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0251183_24	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0251183_25	PHROG	phrog_32516	NA	unknown function
UHGV-0251183_25	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0251183_25	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0251183_26	PHROG	phrog_27246	NA	unknown function
UHGV-0251183_29	PHROG	phrog_20732	NA	unknown function
UHGV-0251183_29	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-0251183_29	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0251183_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0251183_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0251183_30	PHROG	phrog_822	amidase	lysis
UHGV-0251183_30	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0251183_30	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0251183_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0251183_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0251183_30	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0251183_31	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0251183_32	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-0251183_32	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0251183_33	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0251183_33	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-0251183_33	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-0251183_33	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0251183_33	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0251183_33	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0251183_35	PHROG	phrog_8684	NA	unknown function
UHGV-0251183_35	UniRef90	UniRef90_A0A6G1V4R0	YopX domain-containing protein	NA
UHGV-0251183_35	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0251183_35	Pfam	PF09643	YopX protein	YopX
UHGV-0251183_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0251183_40	Structural annotation	PF17600	NA	NA
UHGV-0251183_43	Structural annotation	PF08605, MF_01194, TIGR02097	NA	NA
UHGV-0251183_45	Structural annotation	PF09465, NF005100	NA	NA
UHGV-0251183_46	PHROG	phrog_24381	NA	unknown function
UHGV-0251183_49	Structural annotation	PF20338	NA	NA
UHGV-0251183_50	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0251183_50	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-0251183_51	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-0251183_51	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0251183_52	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0251183_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0251183_52	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0251183_52	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-0251183_52	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0251183_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0251183_52	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0251183_53	PHROG	phrog_32732	NA	unknown function
UHGV-0251183_53	UniRef90	UniRef90_A0A4Q5HPG4	NA	NA
UHGV-0251183_53	eggNOG-mapper	411477.PARMER_02034	NA	NA
UHGV-0251183_53	dbAPIS	APIS052	NA	NA
UHGV-0251183_53	Structural annotation	PF10458	NA	NA
UHGV-0251183_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0251183_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0251183_54	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0251183_54	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0251183_54	Pfam	PF03837	RecT family	RecT
UHGV-0251183_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0251183_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0251183_54	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0251183_56	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0251183_57	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0251183_57	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0251183_57	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0251183_57	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0251183_57	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0251183_57	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0251183_59	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0251183_59	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0251183_59	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-0251183_59	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0251183_59	Pfam	PF00692	dUTPase	dUTPase
UHGV-0251183_59	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0251183_59	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0251183_60	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0251183_60	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-0251183_60	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-0251183_60	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0251183_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0251183_60	Structural annotation	PF05766	NA	NA
UHGV-0251183_62	Structural annotation	PF08587	NA	NA
UHGV-0251183_63	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0251183_63	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-0251183_63	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-0251183_63	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0251183_63	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0251183_64	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0251183_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0251183_64	UniRef90	UniRef90_UPI001C389085	site-specific integrase	NA
UHGV-0251183_64	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0251183_64	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0251183_64	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0251183_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0251183_64	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0251183_64	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0251183_65	COG	COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	NA