UHGV-0251513

Genome information

Genome length 27,328 bps

CDS count 35

Completeness 71.83% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0251513
vOTU ID	vOTU-031450
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR11236274_141_526945_round1256~1547784
BioSample	SAMN14271000
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.85
Jumbo phage	No

Genome content
Genome length	27,328 bps
GC content	46.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	97.61%
Average CDS length	767.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0251513_5	PHROG	phrog_21613	NA	unknown function
UHGV-0251513_5	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-0251513_6	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0251513_6	UniRef90	UniRef90_A0A7V6VUR0	NA	NA
UHGV-0251513_6	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0251513_6	Pfam	PF12684	NA	DUF3799
UHGV-0251513_6	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0251513_6	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0251513_7	Structural annotation	PF00486, COG1654	NA	NA
UHGV-0251513_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0251513_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0251513_8	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0251513_8	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0251513_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0251513_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0251513_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0251513_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0251513_9	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0251513_9	UniRef90	UniRef90_A0A845LM46	HNHc domain-containing protein	NA
UHGV-0251513_9	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0251513_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0251513_9	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0251513_9	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0251513_10	PHROG	phrog_9804	NA	unknown function
UHGV-0251513_10	UniRef90	UniRef90_W9E7Y7	Inhibitor_G39P domain-containing protein	NA
UHGV-0251513_10	eggNOG-mapper	1094508.Tsac_2439	Loader and inhibitor of phage G40P	NA
UHGV-0251513_10	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0251513_10	Structural annotation	PF11417	NA	NA
UHGV-0251513_11	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0251513_11	UniRef90	UniRef90_A0A2G6ARY7	MazG domain-containing protein	NA
UHGV-0251513_11	eggNOG-mapper	1158602.I590_01675	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0251513_11	Pfam	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
UHGV-0251513_11	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0251513_11	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0251513_13	PHROG	phrog_5781	NA	unknown function
UHGV-0251513_13	UniRef90	UniRef90_A0A1S8YN91	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0251513_13	eggNOG-mapper	343509.SG1561	NA	NA
UHGV-0251513_13	Pfam	PF14359	NA	DUF4406
UHGV-0251513_13	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0251513_13	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0251513_14	eggNOG-mapper	994573.T472_0213975	NA	NA
UHGV-0251513_14	Structural annotation	NF007260	NA	NA
UHGV-0251513_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0251513_16	PHROG	phrog_1569	NA	unknown function
UHGV-0251513_16	UniRef90	UniRef90_R6RG22	S-adenosylmethionine synthetase	NA
UHGV-0251513_16	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-0251513_16	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0251513_16	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0251513_16	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0251513_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0251513_17	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0251513_17	UniRef90	UniRef90_A0A414XF84	Methyltransferase	NA
UHGV-0251513_17	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0251513_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0251513_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0251513_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0251513_17	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0251513_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0251513_19	UniRef90	UniRef90_A0A7C6UJJ1	HNH endonuclease	NA
UHGV-0251513_19	eggNOG-mapper	525378.HMPREF0793_1869	HNH nucleases	NA
UHGV-0251513_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0251513_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0251513_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0251513_20	UniRef90	UniRef90_A0A7C6UJJ5	Terminase large subunit	NA
UHGV-0251513_20	eggNOG-mapper	349161.Dred_2607	Phage terminase-like protein large subunit	NA
UHGV-0251513_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0251513_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0251513_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0251513_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0251513_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0251513_21	UniRef90	UniRef90_A4J7R3	Phage portal protein, HK97 family	NA
UHGV-0251513_21	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0251513_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0251513_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0251513_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0251513_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0251513_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0251513_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0251513_22	UniRef90	UniRef90_A0A0X8VDV0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0251513_22	eggNOG-mapper	926561.KB900622_gene646	Serine dehydrogenase proteinase	NA
UHGV-0251513_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0251513_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0251513_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0251513_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0251513_23	UniRef90	UniRef90_UPI001C128ED5	phage major capsid protein	NA
UHGV-0251513_23	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0251513_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0251513_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0251513_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0251513_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0251513_24	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0251513_24	UniRef90	UniRef90_UPI001E602BF5	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0251513_24	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-0251513_25	PHROG	phrog_749	NA	unknown function
UHGV-0251513_25	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0251513_26	PHROG	phrog_19734	NA	unknown function
UHGV-0251513_26	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0251513_26	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0251513_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0251513_27	Structural annotation	PF05657	NA	NA
UHGV-0251513_28	PHROG	phrog_88	major tail protein	tail
UHGV-0251513_28	eggNOG-mapper	573061.Clocel_0789	phage major tail protein, phi13 family	NA
UHGV-0251513_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0251513_28	COG	COG5492	NA	NA
UHGV-0251513_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0251513_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0251513_30	UniRef90	UniRef90_A4J7Q8	Phage protein, HK97 gp10 family	NA
UHGV-0251513_30	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0251513_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0251513_30	Structural annotation	TIGR01725	NA	NA
UHGV-0251513_31	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0251513_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0251513_31	UniRef90	UniRef90_A0A1E7S2U1	Chromosome partition protein Smc	NA
UHGV-0251513_31	eggNOG-mapper	596315.HMPREF0634_0226	Phage tail tape measure protein, TP901 family	NA
UHGV-0251513_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0251513_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0251513_31	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0251513_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0251513_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0251513_33	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0251513_33	UniRef90	UniRef90_A0A1M6KY09	Phage minor structural protein, N-terminal region	NA
UHGV-0251513_33	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0251513_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0251513_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0251513_33	COG	COG4926	Phage-related protein	NA
UHGV-0251513_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0251513_34	PHROG	phrog_23820	tail fiber protein	tail
UHGV-0251513_34	eggNOG-mapper	938278.CAJO01000051_gene772	domain, Protein	NA
UHGV-0251513_34	COG	COG5492	NA	NA
UHGV-0251513_35	PHROG	phrog_1062	NA	unknown function
UHGV-0251513_35	eggNOG-mapper	938288.HG326226_gene876	NA	NA