UHGV-0255910

Genome information

Genome length 29,790 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9554

Prediction confidence Confident

Genome information
Genome ID	UHGV-0255910
vOTU ID	vOTU-049670
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1190689_119_7863_round8-12~2995539
BioSample	SAMD00164805
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9554
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.32
Jumbo phage	No

Genome content
Genome length	29,790 bps
GC content	28.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.28%
Average CDS length	557.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0255910_4	KOfam	K14059	int; integrase	NA
UHGV-0255910_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0255910_4	UniRef90	UniRef90_R5LPI4	Tyr recombinase domain-containing protein	NA
UHGV-0255910_4	eggNOG-mapper	428127.EUBDOL_01497	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0255910_4	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0255910_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0255910_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0255910_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0255910_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0255910_6	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-0255910_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0255910_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0255910_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0255910_7	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-0255910_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0255910_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0255910_7	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0255910_10	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0255910_10	PHROG	phrog_15768	NA	unknown function
UHGV-0255910_10	UniRef90	UniRef90_UPI00195DFC15	NA	NA
UHGV-0255910_10	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-0255910_10	Pfam	PF19808	NA	DUF6291
UHGV-0255910_10	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0255910_10	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0255910_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0255910_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0255910_11	UniRef90	UniRef90_R5LJR5	SF4 helicase domain-containing protein	NA
UHGV-0255910_11	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-0255910_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0255910_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0255910_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0255910_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0255910_14	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0255910_14	UniRef90	UniRef90_A0A7X6YTX1	Putative septation protein SpoVG	NA
UHGV-0255910_14	eggNOG-mapper	334413.FMG_0873	Could be involved in septation	NA
UHGV-0255910_14	Pfam	PF04026	SpoVG	SpoVG
UHGV-0255910_14	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0255910_14	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0255910_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0255910_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0255910_15	UniRef90	UniRef90_A0A1M7NLW3	Site-specific recombinase XerD	NA
UHGV-0255910_15	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0255910_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0255910_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0255910_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0255910_15	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0255910_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0255910_25	UniRef90	UniRef90_R6SME5	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-0255910_25	eggNOG-mapper	1211817.CCAT010000013_gene3191	DNA-templated transcription, initiation	NA
UHGV-0255910_25	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0255910_25	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0255910_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0255910_26	UniRef90	UniRef90_R5M272	HNH endonuclease	NA
UHGV-0255910_26	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0255910_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0255910_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0255910_27	UniRef90	UniRef90_A0A0G3WGQ0	Phage terminase, small subunit	NA
UHGV-0255910_27	eggNOG-mapper	1235798.C817_02582	NA	NA
UHGV-0255910_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0255910_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0255910_28	UniRef90	UniRef90_R5LJQ4	Phage terminase-like protein large subunit	NA
UHGV-0255910_28	eggNOG-mapper	1145276.T479_12260	Terminase	NA
UHGV-0255910_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0255910_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0255910_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0255910_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0255910_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0255910_29	UniRef90	UniRef90_R5LPL0	Phage portal protein	NA
UHGV-0255910_29	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0255910_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0255910_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0255910_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0255910_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0255910_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0255910_30	UniRef90	UniRef90_R5LJT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0255910_30	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0255910_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0255910_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0255910_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0255910_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0255910_31	UniRef90	UniRef90_R5M278	Phage capsid family	NA
UHGV-0255910_31	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0255910_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0255910_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0255910_32	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0255910_32	UniRef90	UniRef90_UPI00133030EC	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0255910_32	eggNOG-mapper	1141106.CAIB01000128_gene1066	NA	NA
UHGV-0255910_34	UniRef90	UniRef90_A0A7C6J040	Phage head closure protein	NA
UHGV-0255910_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0255910_35	Structural annotation	PF05657	NA	NA
UHGV-0255910_36	UniRef90	UniRef90_R5M285	Phage protein HK97 gp10 family	NA
UHGV-0255910_36	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0255910_37	PHROG	phrog_88	major tail protein	tail
UHGV-0255910_37	UniRef90	UniRef90_R5M2L7	Phi13 family phage major tail protein	NA
UHGV-0255910_37	eggNOG-mapper	1460635.JCM19038_2812	phage major tail protein, phi13 family	NA
UHGV-0255910_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0255910_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0255910_38	Structural annotation	PF11836	NA	NA
UHGV-0255910_39	PHROG	phrog_5218	NA	unknown function
UHGV-0255910_39	UniRef90	UniRef90_R5LPM2	Phage tail tape measure protein TP901 family	NA
UHGV-0255910_39	eggNOG-mapper	565664.EFXG_02652	Phage-related minor tail protein	NA
UHGV-0255910_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0255910_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0255910_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0255910_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0255910_40	PHROG	phrog_36410	NA	unknown function
UHGV-0255910_40	UniRef90	UniRef90_R5LJU7	Putative phage tail protein	NA
UHGV-0255910_40	eggNOG-mapper	1211817.CCAT010000079_gene1379	Phage tail protein	NA
UHGV-0255910_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0255910_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0255910_40	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0255910_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0255910_41	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0255910_41	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0255910_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0255910_41	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-0255910_42	PHROG	phrog_1220	head protein	head and packaging
UHGV-0255910_42	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-0255910_42	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0255910_42	Structural annotation	PF20747, PF02839	NA	NA
UHGV-0255910_44	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0255910_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0255910_46	PHROG	phrog_199	holin	lysis
UHGV-0255910_46	UniRef90	UniRef90_UPI001E4FA8BC	phage holin family protein	NA
UHGV-0255910_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0255910_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0255910_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0255910_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0255910_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0255910_48	PHROG	phrog_670	endolysin	lysis
UHGV-0255910_48	UniRef90	UniRef90_A0A6N8U4Y3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0255910_48	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0255910_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0255910_48	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0255910_48	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA