UHGV-0258663

Genome information

Genome length 41,579 bps

CDS count 49

Completeness 94.97% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0258663
vOTU ID	vOTU-009572
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_37223_round13~8137983
BioSample	SAMEA2467036
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	110.55
Jumbo phage	No

Genome content
Genome length	41,579 bps
GC content	39.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.69%
Average CDS length	757.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0258663_1	UniRef90	UniRef90_R6IG65	HTH_17 domain-containing protein	NA
UHGV-0258663_1	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0258663_1	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0258663_1	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0258663_2	Structural annotation	PF03895	NA	NA
UHGV-0258663_3	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0258663_3	UniRef90	UniRef90_A0A316S6H1	DNA maturase B	NA
UHGV-0258663_3	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0258663_3	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0258663_3	COG	COG5410	NA	NA
UHGV-0258663_3	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0258663_3	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0258663_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0258663_5	PHROG	phrog_894	endolysin	lysis
UHGV-0258663_5	UniRef90	UniRef90_A0A316S4M0	Peptidase M15	NA
UHGV-0258663_5	eggNOG-mapper	520999.PROVALCAL_02576	Peptidase M15	NA
UHGV-0258663_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0258663_5	COG	COG3108	NA	NA
UHGV-0258663_5	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0258663_6	PHROG	phrog_2837	tail protein	tail
UHGV-0258663_6	UniRef90	UniRef90_UPI001032C079	NA	NA
UHGV-0258663_6	Pfam	PF14301	NA	DUF4376
UHGV-0258663_7	PHROG	phrog_2295	NA	unknown function
UHGV-0258663_8	PHROG	phrog_6256	tail fiber protein	tail
UHGV-0258663_8	UniRef90	UniRef90_UPI001E3381C0	phage tail fiber protein	NA
UHGV-0258663_8	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0258663_8	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0258663_10	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-0258663_10	UniRef90	UniRef90_A0A402BWU1	LYZ2 domain-containing protein	NA
UHGV-0258663_10	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-0258663_11	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-0258663_11	eggNOG-mapper	1321781.HMPREF1985_01880	NA	NA
UHGV-0258663_11	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0258663_12	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-0258663_12	Structural annotation	MF_04122	NA	NA
UHGV-0258663_13	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0258663_13	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-0258663_13	Structural annotation	PF05384, TIGR02559, COG5034	NA	NA
UHGV-0258663_14	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0258663_14	UniRef90	UniRef90_UPI001032F868	NA	NA
UHGV-0258663_14	eggNOG-mapper	492774.JQMB01000013_gene3025	NA	NA
UHGV-0258663_14	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0258663_14	Structural annotation	PF11090, MF_02210, NF040502, COG1247	NA	NA
UHGV-0258663_15	PHROG	phrog_457	tail protein	tail
UHGV-0258663_15	UniRef90	UniRef90_F1D037	Tail tubular protein B	NA
UHGV-0258663_15	eggNOG-mapper	1262914.BN533_00633	NA	NA
UHGV-0258663_15	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0258663_16	PHROG	phrog_446	tail protein	tail
UHGV-0258663_16	UniRef90	UniRef90_A0A316S4N1	Phage tail protein	NA
UHGV-0258663_16	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0258663_16	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0258663_16	Structural annotation	PF17212	NA	NA
UHGV-0258663_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-0258663_17	UniRef90	UniRef90_A0A316S6A3	Phage capsid protein	NA
UHGV-0258663_17	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0258663_17	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0258663_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0258663_18	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0258663_18	UniRef90	UniRef90_A0A1M6MGQ8	Phage T7 capsid assembly protein	NA
UHGV-0258663_18	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-0258663_18	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0258663_18	Structural annotation	PF05396	NA	NA
UHGV-0258663_19	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0258663_19	UniRef90	UniRef90_A0A316S4L4	Phage tail protein	NA
UHGV-0258663_19	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0258663_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0258663_19	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0258663_21	KOfam	K21526	Gp6; exonuclease [EC:3.1.11.3]	NA
UHGV-0258663_21	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0258663_21	UniRef90	UniRef90_UPI001559D946	T7 exonuclease	NA
UHGV-0258663_21	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0258663_21	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0258663_21	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0258663_21	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0258663_22	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0258663_22	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0258663_22	UniRef90	UniRef90_A0A316SF06	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0258663_22	eggNOG-mapper	1415145.V5Q7K2_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0258663_22	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0258663_22	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0258663_22	Structural annotation	PF17879, TIGR02779	NA	NA
UHGV-0258663_23	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0258663_23	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0258663_24	KOfam	K17892	FTRC; ferredoxin-thioredoxin reductase catalytic chain [EC:1.8.7.2]	NA
UHGV-0258663_24	UniRef90	UniRef90_A0A316S2X1	Ferredoxin:thioredoxin reductase	NA
UHGV-0258663_24	eggNOG-mapper	192952.MM_0057	Ferredoxin thioredoxin reductase catalytic beta chain	NA
UHGV-0258663_24	Pfam	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	FeThRed_B
UHGV-0258663_24	COG	COG4802	Ferredoxin-thioredoxin reductase, catalytic subunit	NA
UHGV-0258663_26	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0258663_26	PHROG	phrog_200	lipoprotein	other
UHGV-0258663_26	UniRef90	UniRef90_F7NKA0	PHB domain-containing protein	NA
UHGV-0258663_26	eggNOG-mapper	1009370.ALO_12566	COG0330 Membrane protease subunits stomatin prohibitin	NA
UHGV-0258663_26	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0258663_26	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0258663_26	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0258663_27	PHROG	phrog_22529	NA	unknown function
UHGV-0258663_27	UniRef90	UniRef90_UPI001032DAAE	3D domain-containing protein	NA
UHGV-0258663_27	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0258663_27	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0258663_27	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0258663_28	PHROG	phrog_6254	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0258663_28	UniRef90	UniRef90_Q5S6T9	I-TslI	NA
UHGV-0258663_28	eggNOG-mapper	344021.Q3YJY2_BPK1F	HNH endonuclease	NA
UHGV-0258663_28	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-0258663_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0258663_29	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0258663_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0258663_29	UniRef90	UniRef90_A0A316SFE6	DNA-directed DNA polymerase	NA
UHGV-0258663_29	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0258663_29	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0258663_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0258663_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0258663_29	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0258663_31	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0258663_31	PHROG	phrog_25611	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0258663_31	UniRef90	UniRef90_A0A316S4P1	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0258663_31	eggNOG-mapper	886377.Murru_2909	Ribonucleoside-triphosphate reductase	NA
UHGV-0258663_31	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0258663_31	NCBIFam	TIGR02827.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0258663_31	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0258663_31	Structural annotation	PF13597, MF_04027, TIGR02827, COG1328	NA	NA
UHGV-0258663_32	UniRef90	UniRef90_A0A1M6MEZ2	Anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0258663_32	eggNOG-mapper	1250005.PHEL85_1083	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0258663_32	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-0258663_32	Structural annotation	PF13353, MF_00917, TIGR02826, COG0602	NA	NA
UHGV-0258663_34	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0258663_34	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0258663_34	UniRef90	UniRef90_A0A316S1N3	Topoisomerase	NA
UHGV-0258663_34	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0258663_34	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0258663_34	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0258663_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0258663_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0258663_34	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0258663_34	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0258663_35	Structural annotation	PF01510, MF_04111	NA	NA
UHGV-0258663_36	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0258663_36	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0258663_36	UniRef90	UniRef90_A0A316S4G4	Endonuclease I	NA
UHGV-0258663_36	eggNOG-mapper	588068.H9YAH6_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-0258663_36	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0258663_37	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0258663_37	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0258663_37	UniRef90	UniRef90_UPI001032DD43	NA	NA
UHGV-0258663_37	eggNOG-mapper	1028800.RG540_CH13640	NA	NA
UHGV-0258663_37	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0258663_37	Structural annotation	PF21265, MF_04153, NF004512	NA	NA
UHGV-0258663_38	Structural annotation	PF18129, MF_00950, TIGR00405, COG4873	NA	NA
UHGV-0258663_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0258663_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0258663_39	UniRef90	UniRef90_A0A316S2L2	dUTP diphosphatase	NA
UHGV-0258663_39	eggNOG-mapper	1121947.AUHK01000013_gene619	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0258663_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0258663_39	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0258663_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0258663_39	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0258663_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0258663_40	UniRef90	UniRef90_UPI001032BA9D	NA	NA
UHGV-0258663_40	eggNOG-mapper	1234593.ANBY01000020_gene1347	NA	NA
UHGV-0258663_40	Pfam	PF11753	NA	DUF3310
UHGV-0258663_40	Structural annotation	PF11753, PF18350	NA	NA
UHGV-0258663_41	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0258663_41	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0258663_41	UniRef90	UniRef90_A0A0J8FQB0	DNA-directed RNA polymerase (Fragment)	NA
UHGV-0258663_41	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0258663_41	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0258663_41	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0258663_42	PHROG	phrog_655	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0258663_43	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0258663_43	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0258663_43	UniRef90	UniRef90_A0A7X8SRK1	DNA-directed RNA polymerase (Fragment)	NA
UHGV-0258663_43	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0258663_43	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0258663_43	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0258663_44	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0258663_44	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0258663_44	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0258663_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0258663_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0258663_45	UniRef90	UniRef90_UPI001032EA2E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0258663_45	eggNOG-mapper	1158604.I591_00377	BRO family, N-terminal domain	NA
UHGV-0258663_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0258663_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0258663_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0258663_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0258663_48	Structural annotation	PF20075, TIGR02612	NA	NA