UHGV-0261159

Genome information

Genome length 26,365 bps

CDS count 42

Completeness 67.85% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0261159
vOTU ID	vOTU-023573
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR9040445_141_93372_round8-12~1979715
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.73
Jumbo phage	No

Genome content
Genome length	26,365 bps
GC content	38.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.23%
Average CDS length	557.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0261159_1	PHROG	phrog_20449	NA	unknown function
UHGV-0261159_1	UniRef90	UniRef90_K1LII6	Phage minor structural protein	NA
UHGV-0261159_1	eggNOG-mapper	883081.HMPREF9698_01629	Prophage endopeptidase tail	NA
UHGV-0261159_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0261159_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0261159_1	COG	COG0466	ATP-dependent Lon protease, bacterial type	NA
UHGV-0261159_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0261159_2	UniRef90	UniRef90_A0A6M0LBS7	Phage tail protein	NA
UHGV-0261159_2	eggNOG-mapper	764299.STRIC_2149	Phage tail protein	NA
UHGV-0261159_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0261159_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0261159_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0261159_2	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0261159_3	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0261159_3	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0261159_3	eggNOG-mapper	764299.STRIC_2148	Phage tail tape measure protein, TP901 family	NA
UHGV-0261159_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0261159_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0261159_3	COG	COG5283	Phage-related tail protein	NA
UHGV-0261159_3	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0261159_4	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0261159_4	UniRef90	UniRef90_A0A4V0ERZ7	NA	NA
UHGV-0261159_4	eggNOG-mapper	585506.HMPREF0877_0856	NA	NA
UHGV-0261159_5	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0261159_5	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0261159_6	PHROG	phrog_238	major tail protein	tail
UHGV-0261159_6	UniRef90	UniRef90_A0A328KND1	Phage major tail protein, TP901-1 family	NA
UHGV-0261159_6	eggNOG-mapper	764299.STRIC_2145	Phage tail tube protein	NA
UHGV-0261159_6	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0261159_6	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0261159_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0261159_7	UniRef90	UniRef90_A0A4D6B2N0	Capsid and scaffold protein	NA
UHGV-0261159_7	eggNOG-mapper	764299.STRIC_2144	NA	NA
UHGV-0261159_7	Structural annotation	PF11367	NA	NA
UHGV-0261159_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0261159_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0261159_9	eggNOG-mapper	883081.HMPREF9698_01115	NA	NA
UHGV-0261159_9	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0261159_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0261159_10	UniRef90	UniRef90_A0A6G7WEA5	Phage head-tail connector protein	NA
UHGV-0261159_10	eggNOG-mapper	1069533.Sinf_0790	Phage gp6-like head-tail connector protein	NA
UHGV-0261159_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0261159_10	Structural annotation	PF05135	NA	NA
UHGV-0261159_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0261159_11	UniRef90	UniRef90_A0A8F1YU86	Phage major capsid protein	NA
UHGV-0261159_11	eggNOG-mapper	1069533.Sinf_0788	Phage capsid family	NA
UHGV-0261159_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0261159_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0261159_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0261159_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0261159_12	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0261159_13	PHROG	phrog_2955	NA	unknown function
UHGV-0261159_14	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0261159_14	eggNOG-mapper	1284708.HMPREF1634_07450	NA	NA
UHGV-0261159_14	Structural annotation	PF20111	NA	NA
UHGV-0261159_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0261159_15	UniRef90	UniRef90_UPI001EDF3480	minor capsid protein	NA
UHGV-0261159_15	eggNOG-mapper	413066.A1EAE3_9CAUD	Phage Mu protein F like protein	NA
UHGV-0261159_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0261159_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0261159_15	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0261159_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0261159_16	UniRef90	UniRef90_A0A6G7WE85	Phage portal protein	NA
UHGV-0261159_16	eggNOG-mapper	883081.HMPREF9698_01120	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0261159_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0261159_16	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0261159_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0261159_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0261159_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0261159_17	UniRef90	UniRef90_UPI0018CAD449	PBSX family phage terminase large subunit	NA
UHGV-0261159_17	eggNOG-mapper	883081.HMPREF9698_01121	Terminase RNAseH like domain	NA
UHGV-0261159_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0261159_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0261159_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0261159_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0261159_17	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0261159_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0261159_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0261159_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0261159_18	UniRef90	UniRef90_UPI000C330FDB	terminase small subunit	NA
UHGV-0261159_18	eggNOG-mapper	879308.HMPREF9130_0411	Terminase small subunit	NA
UHGV-0261159_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0261159_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0261159_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0261159_19	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0261159_19	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0261159_19	UniRef90	UniRef90_A0A0X8FD48	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0261159_19	eggNOG-mapper	1552123.EP57_02430	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0261159_19	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0261159_19	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0261159_19	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0261159_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0261159_20	UniRef90	UniRef90_A0A329NRW1	NA	NA
UHGV-0261159_20	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0261159_20	Pfam	PF07374	NA	DUF1492
UHGV-0261159_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0261159_20	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0261159_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0261159_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0261159_22	UniRef90	UniRef90_A0A0F4L1N9	Single-stranded DNA-binding protein	NA
UHGV-0261159_22	eggNOG-mapper	797515.HMPREF9103_01916	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0261159_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0261159_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0261159_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0261159_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0261159_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0261159_23	PHROG	phrog_2113	NA	unknown function
UHGV-0261159_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0261159_24	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0261159_24	UniRef90	UniRef90_A0A6G1NBC0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0261159_24	eggNOG-mapper	1234679.BN424_2639	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0261159_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0261159_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0261159_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0261159_25	UniRef90	UniRef90_UPI000353544B	NA	NA
UHGV-0261159_25	eggNOG-mapper	883110.HMPREF9260_00673	NA	NA
UHGV-0261159_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0261159_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0261159_25	Structural annotation	PF14297	NA	NA
UHGV-0261159_26	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0261159_26	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0261159_26	UniRef90	UniRef90_A0A347WIM0	Recombinase RecT	NA
UHGV-0261159_26	eggNOG-mapper	673832.D2IYT9_9CAUD	DNA metabolic process	NA
UHGV-0261159_26	Pfam	PF03837	RecT family	RecT
UHGV-0261159_26	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0261159_26	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0261159_27	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0261159_27	UniRef90	UniRef90_A0A347WIM2	YqaJ domain-containing protein	NA
UHGV-0261159_27	eggNOG-mapper	1121105.ATXL01000006_gene1360	YqaJ-like viral recombinase domain	NA
UHGV-0261159_27	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0261159_27	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0261159_27	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0261159_27	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0261159_29	UniRef90	UniRef90_K1LWP0	HTH cro/C1-type domain-containing protein	NA
UHGV-0261159_29	eggNOG-mapper	1121871.AUAT01000013_gene347	NA	NA
UHGV-0261159_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0261159_30	PHROG	phrog_12550	NA	unknown function
UHGV-0261159_30	eggNOG-mapper	764291.STRUR_0790	NA	NA
UHGV-0261159_33	eggNOG-mapper	883110.HMPREF9260_00683	NA	NA
UHGV-0261159_34	PHROG	phrog_10731	NA	unknown function
UHGV-0261159_34	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-0261159_34	Structural annotation	NF040556	NA	NA
UHGV-0261159_35	PHROG	phrog_3240	NA	unknown function
UHGV-0261159_35	UniRef90	UniRef90_Q4ZC34	ORF065	NA
UHGV-0261159_35	eggNOG-mapper	1461246.X2KU02_9VIRU	NA	NA
UHGV-0261159_36	PHROG	phrog_1534	NA	unknown function
UHGV-0261159_36	UniRef90	UniRef90_A0A4J1S6M5	DNA, complete genome	NA
UHGV-0261159_36	eggNOG-mapper	1095737.HMPREF1110_1199	NA	NA
UHGV-0261159_37	PHROG	phrog_14088	NA	unknown function
UHGV-0261159_37	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0261159_41	UniRef90	UniRef90_A0A1A9DZS2	Cro-like protein, phage associated	NA
UHGV-0261159_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0261159_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0261159_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0261159_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0261159_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0261159_42	UniRef90	UniRef90_UPI000845E7E7	helix-turn-helix domain-containing protein	NA
UHGV-0261159_42	eggNOG-mapper	1054460.SPPN_09115	sequence-specific DNA binding	NA
UHGV-0261159_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0261159_42	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0261159_42	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA