UHGV-0261839

Genome information

Genome length 28,376 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0261839
vOTU ID	vOTU-003864
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_99631_round1256~2435919
BioSample	SAMN10285291
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.44
Jumbo phage	No

Genome content
Genome length	28,376 bps
GC content	65.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.26%
Average CDS length	570.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0261839_1	Structural annotation	PF20536	NA	NA
UHGV-0261839_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0261839_2	eggNOG-mapper	764299.STRIC_2533	Minor capsid protein	NA
UHGV-0261839_2	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0261839_2	Structural annotation	PF11114	NA	NA
UHGV-0261839_3	PHROG	phrog_3266	tail completion	connector
UHGV-0261839_3	Structural annotation	PF12691	NA	NA
UHGV-0261839_4	PHROG	phrog_3099	NA	unknown function
UHGV-0261839_4	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0261839_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0261839_6	PHROG	phrog_706	NA	unknown function
UHGV-0261839_6	UniRef90	UniRef90_A0A4U9R6H8	Protein gp15	NA
UHGV-0261839_6	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0261839_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0261839_6	Structural annotation	PF06854	NA	NA
UHGV-0261839_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0261839_7	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0261839_7	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0261839_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0261839_7	Structural annotation	PF20155	NA	NA
UHGV-0261839_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0261839_8	UniRef90	UniRef90_A0A1C5VV34	Phage-related protein	NA
UHGV-0261839_8	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0261839_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0261839_8	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0261839_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0261839_9	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0261839_9	eggNOG-mapper	1449338.JQLU01000005_gene3628	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0261839_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0261839_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0261839_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-0261839_10	eggNOG-mapper	936375.HMPREF1152_1087	NA	NA
UHGV-0261839_10	Structural annotation	PF20747	NA	NA
UHGV-0261839_13	PHROG	phrog_10091	holin	lysis
UHGV-0261839_13	UniRef90	UniRef90_A0A7X2TMW7	Phage holin	NA
UHGV-0261839_13	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0261839_13	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0261839_13	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0261839_13	COG	COG5546	NA	NA
UHGV-0261839_13	Structural annotation	COG5546	NA	NA
UHGV-0261839_14	PHROG	phrog_32635	NA	unknown function
UHGV-0261839_14	UniRef90	UniRef90_A0A374TRJ0	Amidase_5 domain-containing protein	NA
UHGV-0261839_14	eggNOG-mapper	97139.C824_05948	NA	NA
UHGV-0261839_14	Structural annotation	PF05382	NA	NA
UHGV-0261839_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0261839_17	UniRef90	UniRef90_A0A3N0WK81	Terminase	NA
UHGV-0261839_17	eggNOG-mapper	992406.RIA_0201	transposase activity	NA
UHGV-0261839_17	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0261839_17	Structural annotation	PF07141	NA	NA
UHGV-0261839_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0261839_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0261839_18	UniRef90	UniRef90_E9SH72	Phage terminase, large subunit, PBSX family	NA
UHGV-0261839_18	eggNOG-mapper	246199.CUS_7600	Phage terminase, large subunit, PBSX family	NA
UHGV-0261839_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0261839_18	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0261839_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0261839_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0261839_18	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, TIGR01445, COG1783	NA	NA
UHGV-0261839_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0261839_19	UniRef90	UniRef90_A0A345MKB8	Portal protein	NA
UHGV-0261839_19	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0261839_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0261839_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0261839_20	UniRef90	UniRef90_A0A345MKC2	Minor capsid protein	NA
UHGV-0261839_20	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0261839_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0261839_20	COG	COG2369	NA	NA
UHGV-0261839_20	Structural annotation	PF06152	NA	NA
UHGV-0261839_21	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0261839_21	eggNOG-mapper	68219.JNXI01000003_gene4965	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0261839_21	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0261839_22	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0261839_22	UniRef90	UniRef90_A0A7D7IMU6	Replication protein	NA
UHGV-0261839_22	eggNOG-mapper	314262.MED193_14927	NA	NA
UHGV-0261839_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0261839_24	Structural annotation	PF20714, MF_01909, NF040939, COG4738	NA	NA
UHGV-0261839_28	PHROG	phrog_14970	NA	unknown function
UHGV-0261839_28	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0261839_28	eggNOG-mapper	411476.BACOVA_03882	double-strand break repair protein	NA
UHGV-0261839_28	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0261839_28	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0261839_28	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0261839_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0261839_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0261839_30	UniRef90	UniRef90_A0A5K1ISL8	Single-stranded DNA-binding protein	NA
UHGV-0261839_30	eggNOG-mapper	742722.HMPREF9463_00204	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0261839_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0261839_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0261839_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0261839_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0261839_30	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0261839_33	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0261839_33	UniRef90	UniRef90_UPI000E3BC5A6	NA	NA
UHGV-0261839_33	eggNOG-mapper	399185.A1BUA6_9CAUD	NA	NA
UHGV-0261839_33	Pfam	PF11753	NA	DUF3310
UHGV-0261839_34	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0261839_36	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0261839_36	UniRef90	UniRef90_A0A7C6TWW8	Siphovirus Gp157 family protein	NA
UHGV-0261839_36	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0261839_36	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0261839_36	Structural annotation	PF05565	NA	NA
UHGV-0261839_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0261839_37	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0261839_37	UniRef90	UniRef90_A0A415UWA3	Methyltransferase	NA
UHGV-0261839_37	eggNOG-mapper	1064535.MELS_1947	N-4 methylation of cytosine	NA
UHGV-0261839_37	PADLOC	MTase_II_00106	Type II methyltransferase	RM
UHGV-0261839_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0261839_37	COG	COG0863	DNA modification methylase	NA
UHGV-0261839_37	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0261839_40	UniRef90	UniRef90_A0A415JIE1	XRE family transcriptional regulator	NA
UHGV-0261839_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0261839_40	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-0261839_41	PHROG	phrog_28142	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0261839_41	eggNOG-mapper	1111121.HMPREF1247_0042	NA	NA
UHGV-0261839_43	PHROG	phrog_267	major head protein	head and packaging
UHGV-0261839_43	UniRef90	UniRef90_A0A7X7VRL6	P22 coat protein - protein 5 domain protein	NA
UHGV-0261839_43	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0261839_43	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0261839_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0261839_44	PHROG	phrog_892	tail fiber protein	tail
UHGV-0261839_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0261839_45	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA