UHGV-0261976

Genome information

Genome length 33,307 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9658

Prediction confidence Confident

Genome information
Genome ID	UHGV-0261976
vOTU ID	vOTU-001214
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_7666_round8-12~242295
BioSample	SAMN05971631
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9658
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.37
Jumbo phage	No

Genome content
Genome length	33,307 bps
GC content	30.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.00%
Average CDS length	542.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0261976_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0261976_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0261976_1	UniRef90	UniRef90_A0A1C6JSC5	Antitoxin PezA	NA
UHGV-0261976_1	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0261976_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0261976_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0261976_1	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0261976_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0261976_8	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-0261976_8	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0261976_8	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0261976_8	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0261976_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0261976_8	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0261976_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0261976_9	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0261976_9	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0261976_9	Structural annotation	PF21578	NA	NA
UHGV-0261976_10	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0261976_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0261976_10	UniRef90	UniRef90_A0A6N4TM83	Integrase	NA
UHGV-0261976_10	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0261976_10	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0261976_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0261976_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0261976_10	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0261976_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0261976_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0261976_11	UniRef90	UniRef90_A0A316S1N2	Cytosine-specific methyltransferase	NA
UHGV-0261976_11	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0261976_11	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0261976_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0261976_11	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0261976_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0261976_11	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0261976_14	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0261976_14	UniRef90	UniRef90_UPI001D0B2024	ASCH domain-containing protein	NA
UHGV-0261976_14	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0261976_14	Pfam	PF12961	NA	DUF3850
UHGV-0261976_14	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0261976_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0261976_25	UniRef90	UniRef90_A0A6N4TPD2	HTH luxR-type domain-containing protein	NA
UHGV-0261976_25	eggNOG-mapper	768710.DesyoDRAFT_5168	DNA-templated transcription, initiation	NA
UHGV-0261976_25	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0261976_26	PHROG	phrog_1129	holin	lysis
UHGV-0261976_26	UniRef90	UniRef90_A0A316A1J8	Holin family Hol44 protein (Superfamily V)	NA
UHGV-0261976_26	eggNOG-mapper	742733.HMPREF9469_00939	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0261976_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0261976_26	Structural annotation	PF06946	NA	NA
UHGV-0261976_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0261976_28	PHROG	phrog_435	endolysin	lysis
UHGV-0261976_28	UniRef90	UniRef90_UPI0019525F9E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0261976_28	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0261976_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0261976_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0261976_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0261976_29	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-0261976_29	eggNOG-mapper	469618.FVAG_00793	transposase activity	NA
UHGV-0261976_29	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0261976_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0261976_29	Structural annotation	PF07141	NA	NA
UHGV-0261976_30	PHROG	phrog_24267	NA	unknown function
UHGV-0261976_30	UniRef90	UniRef90_A0A099I3H7	Pilus assembly protein (Fragment)	NA
UHGV-0261976_30	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0261976_30	COG	COG4675	Phage tail collar domain	NA
UHGV-0261976_31	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0261976_32	PHROG	phrog_1382	NA	unknown function
UHGV-0261976_32	Structural annotation	NF040910	NA	NA
UHGV-0261976_33	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0261976_33	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0261976_33	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0261976_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0261976_33	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0261976_34	PHROG	phrog_1066	NA	unknown function
UHGV-0261976_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0261976_35	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0261976_35	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0261976_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0261976_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0261976_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0261976_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0261976_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0261976_36	UniRef90	UniRef90_A0A6N7STP0	Phage portal protein	NA
UHGV-0261976_36	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0261976_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0261976_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0261976_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0261976_37	KOfam	K06904	NA	NA
UHGV-0261976_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0261976_37	UniRef90	UniRef90_UPI0005C7E266	HK97 family phage prohead protease	NA
UHGV-0261976_37	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0261976_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0261976_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0261976_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0261976_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0261976_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0261976_38	UniRef90	UniRef90_A9VQV2	Phage major capsid protein, putative	NA
UHGV-0261976_38	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0261976_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0261976_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0261976_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0261976_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0261976_39	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0261976_40	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0261976_41	PHROG	phrog_24103	NA	unknown function
UHGV-0261976_41	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0261976_43	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0261976_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0261976_44	Structural annotation	TIGR01725	NA	NA
UHGV-0261976_45	Structural annotation	PF05657	NA	NA
UHGV-0261976_46	PHROG	phrog_88	major tail protein	tail
UHGV-0261976_46	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0261976_46	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0261976_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0261976_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0261976_48	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0261976_48	PHROG	phrog_23464	NA	unknown function
UHGV-0261976_48	UniRef90	UniRef90_G1VXM8	PhageMin_Tail domain-containing protein	NA
UHGV-0261976_48	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0261976_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0261976_48	Structural annotation	COG5280	NA	NA
UHGV-0261976_49	PHROG	phrog_36410	NA	unknown function
UHGV-0261976_49	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0261976_49	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0261976_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0261976_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0261976_49	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0261976_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0261976_50	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0261976_50	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0261976_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0261976_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0261976_51	PHROG	phrog_1220	head protein	head and packaging
UHGV-0261976_51	UniRef90	UniRef90_A0A2T0B3H8	BppU_IgG domain-containing protein	NA
UHGV-0261976_51	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0261976_51	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0261976_52	PHROG	phrog_14664	NA	unknown function
UHGV-0261976_52	eggNOG-mapper	1302863.I872_00455	NA	NA
UHGV-0261976_52	Structural annotation	PF00644, COG5654	NA	NA
UHGV-0261976_54	PHROG	phrog_21664	NA	unknown function
UHGV-0261976_54	UniRef90	UniRef90_UPI000B87EFDE	protein-export chaperone SecB	NA
UHGV-0261976_54	eggNOG-mapper	1136177.KCA1_0941	Preprotein translocase subunit SecB	NA
UHGV-0261976_54	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0261976_55	KOfam	K14059	int; integrase	NA
UHGV-0261976_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0261976_55	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-0261976_55	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-0261976_55	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0261976_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0261976_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0261976_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0261976_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA