UHGV-0262310

Genome information

vOTU vOTU-081915

Genome length 58,266 bps

CDS count 104

Completeness 98.78% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0262310
vOTU ID	vOTU-081915
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k99_43415_round1256~395917
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.36
Jumbo phage	No

Genome content
Genome length	58,266 bps
GC content	38.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	104
CDS density	86.82%
Average CDS length	491.31 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0262310_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0262310_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0262310_1	Structural annotation	PF16677	NA	NA
UHGV-0262310_2	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0262310_2	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0262310_2	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0262310_2	Pfam	PF11753	NA	DUF3310
UHGV-0262310_2	Structural annotation	PF11753	NA	NA
UHGV-0262310_4	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0262310_4	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0262310_5	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0262310_5	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0262310_6	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0262310_13	PHROG	phrog_1233	NA	unknown function
UHGV-0262310_13	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0262310_13	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0262310_13	Structural annotation	PF13058	NA	NA
UHGV-0262310_14	PHROG	phrog_2316	NA	unknown function
UHGV-0262310_14	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0262310_14	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0262310_14	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0262310_15	PHROG	phrog_10678	NA	unknown function
UHGV-0262310_17	PHROG	phrog_6058	NA	unknown function
UHGV-0262310_17	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0262310_17	Structural annotation	NF033787	NA	NA
UHGV-0262310_18	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0262310_18	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0262310_18	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0262310_18	COG	COG5410	NA	NA
UHGV-0262310_18	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0262310_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0262310_19	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0262310_19	Structural annotation	PF02996	NA	NA
UHGV-0262310_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0262310_20	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0262310_20	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0262310_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0262310_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0262310_21	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0262310_21	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0262310_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0262310_21	COG	COG2369	NA	NA
UHGV-0262310_21	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0262310_22	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0262310_23	PHROG	phrog_909	major head protein	head and packaging
UHGV-0262310_23	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0262310_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-0262310_24	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0262310_24	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0262310_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0262310_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0262310_25	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0262310_25	Structural annotation	PF21169	NA	NA
UHGV-0262310_26	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0262310_27	PHROG	phrog_4105	NA	unknown function
UHGV-0262310_27	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0262310_28	PHROG	phrog_1129	holin	lysis
UHGV-0262310_28	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0262310_28	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0262310_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0262310_28	Structural annotation	PF06946	NA	NA
UHGV-0262310_29	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0262310_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0262310_30	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0262310_30	AcrCatalog	cluster_24841	NA	NA
UHGV-0262310_31	Structural annotation	PF05657	NA	NA
UHGV-0262310_32	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0262310_32	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0262310_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0262310_35	PHROG	phrog_291	endolysin	lysis
UHGV-0262310_35	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0262310_35	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0262310_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0262310_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0262310_35	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0262310_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0262310_36	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0262310_36	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0262310_36	COG	COG1511	NA	NA
UHGV-0262310_37	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0262310_37	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0262310_37	eggNOG-mapper	1380384.JADN01000003_gene632	Intron encoded nuclease repeat motif	NA
UHGV-0262310_37	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0262310_37	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0262310_37	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0262310_37	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0262310_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0262310_38	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0262310_38	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0262310_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0262310_39	PHROG	phrog_1194	NA	unknown function
UHGV-0262310_39	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-0262310_39	Pfam	PF20458	NA	DUF6711
UHGV-0262310_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0262310_40	PHROG	phrog_6616	tail protein	tail
UHGV-0262310_40	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0262310_40	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0262310_40	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0262310_40	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0262310_41	PHROG	phrog_24159	tail fiber protein	tail
UHGV-0262310_41	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0262310_43	PHROG	phrog_3845	NA	unknown function
UHGV-0262310_43	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0262310_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0262310_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0262310_44	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0262310_44	eggNOG-mapper	1123263.AUKY01000015_gene1633	Peptidase S24-like	NA
UHGV-0262310_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0262310_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0262310_44	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0262310_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0262310_45	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0262310_45	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0262310_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0262310_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0262310_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0262310_46	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0262310_46	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0262310_46	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0262310_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0262310_46	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0262310_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0262310_46	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0262310_48	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0262310_48	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0262310_51	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0262310_51	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0262310_51	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0262310_51	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0262310_51	Pfam	PF13476	AAA domain	AAA_23
UHGV-0262310_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0262310_51	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0262310_52	PHROG	phrog_2164	NA	unknown function
UHGV-0262310_52	UniRef90	UniRef90_B9BHQ7	Gp4	NA
UHGV-0262310_55	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0262310_55	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0262310_55	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0262310_55	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0262310_56	PHROG	phrog_25456	NA	unknown function
UHGV-0262310_57	eggNOG-mapper	411470.RUMGNA_00744	SNF2 family N-terminal domain	NA
UHGV-0262310_57	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0262310_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0262310_58	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0262310_58	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0262310_58	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0262310_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0262310_59	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0262310_59	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0262310_59	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0262310_59	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0262310_59	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0262310_60	PHROG	phrog_7711	NA	unknown function
UHGV-0262310_60	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0262310_60	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0262310_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0262310_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0262310_63	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0262310_63	eggNOG-mapper	1235793.C809_02091	Single-strand binding protein family	NA
UHGV-0262310_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0262310_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0262310_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0262310_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0262310_63	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0262310_64	Structural annotation	PF00041	NA	NA
UHGV-0262310_66	PHROG	phrog_19106	NA	unknown function
UHGV-0262310_66	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0262310_66	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0262310_66	Structural annotation	TIGR01453	NA	NA
UHGV-0262310_68	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0262310_68	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0262310_68	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0262310_68	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0262310_69	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0262310_69	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0262310_69	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0262310_69	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0262310_70	PHROG	phrog_9804	NA	unknown function
UHGV-0262310_70	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0262310_70	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0262310_70	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0262310_70	Structural annotation	PF11417	NA	NA
UHGV-0262310_75	PHROG	phrog_21026	NA	unknown function
UHGV-0262310_76	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0262310_77	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0262310_77	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0262310_78	Structural annotation	COG4446	NA	NA
UHGV-0262310_81	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0262310_81	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0262310_81	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0262310_81	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0262310_81	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0262310_81	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0262310_81	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0262310_81	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0262310_81	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0262310_84	PHROG	phrog_17284	NA	unknown function
UHGV-0262310_84	UniRef90	UniRef90_A0A8D9UIK6	Cytosine specific methyltransferase	NA
UHGV-0262310_84	eggNOG-mapper	1300150.EMQU_2511	C-5 cytosine-specific DNA methylase	NA
UHGV-0262310_84	PADLOC	MTase_II_00147	Type II methyltransferase	RM
UHGV-0262310_84	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0262310_84	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0262310_85	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0262310_87	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0262310_87	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0262310_87	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0262310_87	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0262310_87	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0262310_87	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0262310_87	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0262310_88	KOfam	K14059	int; integrase	NA
UHGV-0262310_88	PHROG	phrog_1	integrase	integration and excision
UHGV-0262310_88	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0262310_88	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0262310_88	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0262310_88	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0262310_88	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0262310_88	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0262310_88	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0262310_90	PHROG	phrog_21718	NA	unknown function
UHGV-0262310_90	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0262310_90	Structural annotation	NF033819	NA	NA
UHGV-0262310_92	PHROG	phrog_16490	NA	unknown function
UHGV-0262310_92	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0262310_93	PHROG	phrog_20016	NA	unknown function
UHGV-0262310_93	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0262310_93	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0262310_93	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0262310_94	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0262310_95	PHROG	phrog_1233	NA	unknown function
UHGV-0262310_95	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0262310_103	PHROG	phrog_31631	NA	unknown function
UHGV-0262310_103	eggNOG-mapper	1235802.C823_04520	NA	NA