UHGV-0263857

Genome information

Genome length 27,642 bps

CDS count 36

Completeness 69.10% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0263857
vOTU ID	vOTU-031572
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8791371_119_32228_round14~2977394
BioSample	SAMEA2466906
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.07
Jumbo phage	No

Genome content
Genome length	27,642 bps
GC content	49.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.85%
Average CDS length	722.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0263857_3	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0263857_3	PHROG	phrog_1499	NA	unknown function
UHGV-0263857_3	UniRef90	UniRef90_UPI001D0905B9	AAA family ATPase	NA
UHGV-0263857_3	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0263857_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-0263857_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0263857_3	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0263857_4	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0263857_4	UniRef90	UniRef90_UPI001D0734DA	AAA family ATPase	NA
UHGV-0263857_4	eggNOG-mapper	268407.PWYN_12340	AAA domain	NA
UHGV-0263857_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0263857_4	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0263857_5	PHROG	phrog_2698	NA	unknown function
UHGV-0263857_5	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-0263857_5	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0263857_5	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0263857_6	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0263857_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0263857_6	UniRef90	UniRef90_UPI001D073100	DEAD/DEAH box helicase	NA
UHGV-0263857_6	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0263857_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0263857_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0263857_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0263857_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0263857_6	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0263857_7	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0263857_7	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0263857_7	UniRef90	UniRef90_UPI001D078284	AAA family ATPase	NA
UHGV-0263857_7	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0263857_7	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0263857_7	Pfam	PF13481	AAA domain	AAA_25
UHGV-0263857_7	COG	COG3598	RecA-family ATPase	NA
UHGV-0263857_7	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0263857_8	PHROG	phrog_16687	NA	unknown function
UHGV-0263857_8	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0263857_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0263857_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0263857_9	UniRef90	UniRef90_UPI001D08BFE8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0263857_9	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0263857_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0263857_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0263857_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0263857_10	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0263857_11	PHROG	phrog_22543	NA	unknown function
UHGV-0263857_12	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0263857_12	eggNOG-mapper	138119.DSY2187	DNA-templated transcription, initiation	NA
UHGV-0263857_12	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0263857_12	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0263857_15	PHROG	phrog_1863	NA	unknown function
UHGV-0263857_15	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0263857_16	PHROG	phrog_13256	NA	unknown function
UHGV-0263857_16	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0263857_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0263857_17	PHROG	phrog_291	endolysin	lysis
UHGV-0263857_17	UniRef90	UniRef90_UPI001D06C0C4	glycoside hydrolase family 25 protein	NA
UHGV-0263857_17	eggNOG-mapper	877411.JMMA01000002_gene2608	hydrolase, family 25	NA
UHGV-0263857_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0263857_17	Pfam	PF01476	LysM domain	LysM
UHGV-0263857_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0263857_17	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0263857_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0263857_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0263857_18	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0263857_18	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0263857_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0263857_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0263857_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0263857_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0263857_20	UniRef90	UniRef90_UPI00156ECB0A	HNH endonuclease	NA
UHGV-0263857_20	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0263857_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0263857_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0263857_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0263857_21	PHROG	phrog_1066	NA	unknown function
UHGV-0263857_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0263857_22	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0263857_22	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0263857_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0263857_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0263857_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0263857_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0263857_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0263857_23	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0263857_23	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0263857_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0263857_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0263857_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0263857_24	KOfam	K06904	NA	NA
UHGV-0263857_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0263857_24	UniRef90	UniRef90_A0A6N7ST80	HK97 family phage prohead protease	NA
UHGV-0263857_24	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0263857_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0263857_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0263857_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0263857_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0263857_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0263857_25	UniRef90	UniRef90_UPI001D08CA0B	phage major capsid protein	NA
UHGV-0263857_25	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0263857_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0263857_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0263857_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0263857_25	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0263857_26	eggNOG-mapper	632245.CLP_1654	NA	NA
UHGV-0263857_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0263857_26	Structural annotation	PF18316	NA	NA
UHGV-0263857_27	UniRef90	UniRef90_R7FBN9	Putative phage head-tail adaptor	NA
UHGV-0263857_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0263857_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0263857_29	Structural annotation	PF05657	NA	NA
UHGV-0263857_30	PHROG	phrog_88	major tail protein	tail
UHGV-0263857_30	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0263857_30	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0263857_30	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0263857_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0263857_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0263857_32	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0263857_32	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0263857_32	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0263857_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0263857_32	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0263857_32	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0263857_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0263857_33	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0263857_33	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0263857_33	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0263857_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0263857_33	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0263857_34	PHROG	phrog_538	minor tail protein	tail
UHGV-0263857_34	UniRef90	UniRef90_UPI001D076D06	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0263857_34	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0263857_34	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0263857_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0263857_35	PHROG	phrog_1220	head protein	head and packaging
UHGV-0263857_35	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0263857_35	Structural annotation	PF16569, PF21567	NA	NA