UHGV-0270450

Genome information

Genome length 25,556 bps

CDS count 34

Completeness 64.70% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0270450
vOTU ID	vOTU-023829
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR2142195_119_63497_round347~4052318
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.19
Jumbo phage	No

Genome content
Genome length	25,556 bps
GC content	37.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	94.43%
Average CDS length	712.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0270450_1	PHROG	phrog_1009	NA	unknown function
UHGV-0270450_1	eggNOG-mapper	565664.EFXG_03971	NA	NA
UHGV-0270450_2	PHROG	phrog_134	NA	unknown function
UHGV-0270450_2	UniRef90	UniRef90_A0A0M2B3U8	XkdX family protein	NA
UHGV-0270450_2	eggNOG-mapper	565664.EFXG_01755	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0270450_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0270450_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0270450_3	PHROG	phrog_1536	NA	unknown function
UHGV-0270450_3	eggNOG-mapper	1104325.M7W_1370	NA	NA
UHGV-0270450_4	PHROG	phrog_10054	NA	unknown function
UHGV-0270450_4	UniRef90	UniRef90_UPI000CF13F43	BppU family phage baseplate upper protein	NA
UHGV-0270450_4	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-0270450_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0270450_4	Structural annotation	PF10651, PF03422, PF08931, NF033675, NF040788	NA	NA
UHGV-0270450_5	PHROG	phrog_4577	tail protein	tail
UHGV-0270450_5	eggNOG-mapper	1104325.M7W_1368	NA	NA
UHGV-0270450_6	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0270450_6	UniRef90	UniRef90_A0A8A8G701	Phage tail protein	NA
UHGV-0270450_6	eggNOG-mapper	1140001.I571_02121	Prophage endopeptidase tail	NA
UHGV-0270450_6	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0270450_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0270450_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0270450_6	COG	COG4926	Phage-related protein	NA
UHGV-0270450_6	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0270450_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0270450_7	UniRef90	UniRef90_S4FH66	Phage tail component protein	NA
UHGV-0270450_7	eggNOG-mapper	1104325.M7W_1366	Phage tail protein	NA
UHGV-0270450_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0270450_7	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0270450_8	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0270450_8	UniRef90	UniRef90_A0A2G0EAS2	Capsid protein	NA
UHGV-0270450_8	eggNOG-mapper	1104325.M7W_1365	Transglycosylase SLT domain	NA
UHGV-0270450_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0270450_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0270450_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0270450_8	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-0270450_9	PHROG	phrog_706	NA	unknown function
UHGV-0270450_9	UniRef90	UniRef90_C9AN02	Bacteriophage Gp15 protein	NA
UHGV-0270450_9	eggNOG-mapper	1104325.M7W_1364	Bacteriophage Gp15 protein	NA
UHGV-0270450_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0270450_9	Structural annotation	PF06854	NA	NA
UHGV-0270450_10	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0270450_10	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-0270450_10	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-0270450_10	Structural annotation	PF10666	NA	NA
UHGV-0270450_12	PHROG	phrog_820	major tail protein	tail
UHGV-0270450_12	UniRef90	UniRef90_A0A345FQJ9	Capsid protein	NA
UHGV-0270450_12	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-0270450_12	COG	COG5492	NA	NA
UHGV-0270450_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0270450_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0270450_13	UniRef90	UniRef90_UPI0018A2E21A	capsid protein	NA
UHGV-0270450_13	eggNOG-mapper	1140001.I571_02114	Minor capsid protein from bacteriophage	NA
UHGV-0270450_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0270450_13	Structural annotation	PF12691	NA	NA
UHGV-0270450_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0270450_14	UniRef90	UniRef90_A0A345FQJ7	Capsid protein	NA
UHGV-0270450_14	eggNOG-mapper	1140001.I571_02113	Minor capsid protein	NA
UHGV-0270450_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0270450_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0270450_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0270450_15	UniRef90	UniRef90_UPI00090013CF	putative minor capsid protein	NA
UHGV-0270450_15	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-0270450_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0270450_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0270450_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0270450_16	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-0270450_16	eggNOG-mapper	1140001.I571_02111	NA	NA
UHGV-0270450_17	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0270450_17	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0270450_17	UniRef90	UniRef90_A0A828ZU37	BIG2 domain-containing protein	NA
UHGV-0270450_17	eggNOG-mapper	1140001.I571_02110	domain, Protein	NA
UHGV-0270450_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0270450_17	COG	COG5492	NA	NA
UHGV-0270450_17	Structural annotation	PF02368	NA	NA
UHGV-0270450_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0270450_18	UniRef90	UniRef90_A0A829A4D2	BIG2 domain-containing protein	NA
UHGV-0270450_18	eggNOG-mapper	1140001.I571_02109	NA	NA
UHGV-0270450_18	Structural annotation	PF20911	NA	NA
UHGV-0270450_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0270450_19	UniRef90	UniRef90_S4E2G7	Phage minor structural protein GP20	NA
UHGV-0270450_19	eggNOG-mapper	1158614.I592_01120	Phage minor structural protein GP20	NA
UHGV-0270450_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0270450_19	Structural annotation	PF06810	NA	NA
UHGV-0270450_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0270450_20	UniRef90	UniRef90_UPI0011074823	NUMOD4 domain-containing protein	NA
UHGV-0270450_20	eggNOG-mapper	1226322.HMPREF1545_00041	NUMOD4 motif	NA
UHGV-0270450_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0270450_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0270450_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0270450_20	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0270450_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0270450_21	UniRef90	UniRef90_S4EI20	Phage minor capsid protein 2	NA
UHGV-0270450_21	eggNOG-mapper	1140001.I571_02107	Phage minor capsid protein 2	NA
UHGV-0270450_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0270450_21	Structural annotation	PF06152	NA	NA
UHGV-0270450_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0270450_22	UniRef90	UniRef90_A0A3F3LAK1	Phage portal protein	NA
UHGV-0270450_22	eggNOG-mapper	1158614.I592_01118	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0270450_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0270450_22	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0270450_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0270450_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0270450_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0270450_23	UniRef90	UniRef90_S4EAE9	Phage terminase, large subunit, PBSX family	NA
UHGV-0270450_23	eggNOG-mapper	1104325.M7W_1351	Terminase RNAseH like domain	NA
UHGV-0270450_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0270450_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0270450_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0270450_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0270450_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0270450_24	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0270450_24	UniRef90	UniRef90_UPI00196B2C2C	phage terminase small subunit	NA
UHGV-0270450_24	eggNOG-mapper	1140001.I571_02104	DNA packaging	NA
UHGV-0270450_24	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0270450_24	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0270450_24	COG	COG5484	NA	NA
UHGV-0270450_24	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0270450_25	PHROG	phrog_1202	NA	unknown function
UHGV-0270450_25	UniRef90	UniRef90_C9APX8	Predicted protein	NA
UHGV-0270450_25	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-0270450_25	Structural annotation	PF18789	NA	NA
UHGV-0270450_26	PHROG	phrog_13806	NA	unknown function
UHGV-0270450_27	PHROG	phrog_10400	NA	unknown function
UHGV-0270450_28	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0270450_28	UniRef90	UniRef90_A0A8G1S6S1	ArpU family transcriptional regulator	NA
UHGV-0270450_28	eggNOG-mapper	768486.EHR_09840	NA	NA
UHGV-0270450_28	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-0270450_29	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0270450_29	UniRef90	UniRef90_A0A132PAL7	Transcriptional regulator	NA
UHGV-0270450_29	eggNOG-mapper	768486.EHR_00690	NA	NA
UHGV-0270450_29	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0270450_29	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0270450_30	PHROG	phrog_3302	NA	unknown function
UHGV-0270450_30	UniRef90	UniRef90_Q47835	ArpT	NA
UHGV-0270450_30	eggNOG-mapper	1104325.M7W_1344	NA	NA
UHGV-0270450_30	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA
UHGV-0270450_31	PHROG	phrog_14352	NA	unknown function
UHGV-0270450_31	UniRef90	UniRef90_UPI001F485031	NA	NA
UHGV-0270450_31	Pfam	PF07852	NA	DUF1642
UHGV-0270450_32	PHROG	phrog_34095	NA	unknown function
UHGV-0270450_32	UniRef90	UniRef90_UPI0002A45DB2	NA	NA
UHGV-0270450_32	Pfam	PF07852	NA	DUF1642
UHGV-0270450_33	PHROG	phrog_1083	NA	unknown function
UHGV-0270450_33	UniRef90	UniRef90_A0A242IFJ0	NA	NA
UHGV-0270450_33	eggNOG-mapper	768486.EHR_09500	NA	NA
UHGV-0270450_33	Pfam	PF06600	NA	DUF1140
UHGV-0270450_33	Structural annotation	PF06600, COG5420	NA	NA
UHGV-0270450_34	PHROG	phrog_5224	NA	unknown function
UHGV-0270450_34	eggNOG-mapper	565664.EFXG_03934	NA	NA