UHGV-0271619

Genome information

Genome length 44,891 bps

CDS count 60

Completeness 96.41% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0271619
vOTU ID	vOTU-011840
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_36856_round1256~3196809
BioSample	SAMN02333926
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.49
Jumbo phage	No

Genome content
Genome length	44,891 bps
GC content	45.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.80%
Average CDS length	675.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0271619_1	PHROG	phrog_9880	NA	unknown function
UHGV-0271619_1	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0271619_1	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0271619_1	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0271619_2	PHROG	phrog_10475	endolysin	lysis
UHGV-0271619_2	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0271619_2	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0271619_2	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0271619_2	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0271619_3	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0271619_3	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0271619_3	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0271619_4	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0271619_4	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0271619_5	PHROG	phrog_376	tail protein	tail
UHGV-0271619_5	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0271619_5	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0271619_5	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0271619_5	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0271619_6	PHROG	phrog_394	tail protein	tail
UHGV-0271619_6	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0271619_6	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-0271619_6	Structural annotation	PF17212	NA	NA
UHGV-0271619_7	PHROG	phrog_427	NA	unknown function
UHGV-0271619_7	Structural annotation	PF21190	NA	NA
UHGV-0271619_8	PHROG	phrog_212	major head protein	head and packaging
UHGV-0271619_8	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0271619_8	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0271619_8	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0271619_8	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0271619_9	PHROG	phrog_458	protease	other
UHGV-0271619_9	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0271619_10	PHROG	phrog_528	NA	unknown function
UHGV-0271619_10	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0271619_11	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0271619_11	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0271619_11	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0271619_11	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0271619_11	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0271619_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0271619_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0271619_13	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0271619_13	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0271619_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0271619_13	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0271619_15	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-0271619_15	eggNOG-mapper	1050201.KB913034_gene791	NA	NA
UHGV-0271619_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0271619_15	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0271619_18	PHROG	phrog_15863	NA	unknown function
UHGV-0271619_18	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0271619_18	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0271619_18	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0271619_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0271619_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0271619_23	UniRef90	UniRef90_A0A1Q6RQK6	Single-stranded DNA-binding protein	NA
UHGV-0271619_23	eggNOG-mapper	904314.SEVCU012_1220	Single-stranded DNA-binding protein	NA
UHGV-0271619_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0271619_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0271619_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0271619_23	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0271619_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0271619_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0271619_24	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0271619_24	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0271619_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0271619_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0271619_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0271619_26	PHROG	phrog_2776	NA	unknown function
UHGV-0271619_26	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0271619_26	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0271619_29	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0271619_29	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0271619_29	eggNOG-mapper	1300150.EMQU_2292	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0271619_29	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0271619_29	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0271619_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0271619_29	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0271619_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0271619_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0271619_31	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0271619_31	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-0271619_31	Pfam	PF03837	RecT family	RecT
UHGV-0271619_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0271619_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0271619_31	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0271619_32	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0271619_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0271619_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0271619_32	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0271619_33	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0271619_33	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0271619_33	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0271619_33	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0271619_33	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0271619_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0271619_33	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0271619_35	PHROG	phrog_14367	NA	unknown function
UHGV-0271619_35	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0271619_35	eggNOG-mapper	397291.C804_02419	LysM domain	NA
UHGV-0271619_35	Pfam	PF01476	LysM domain	LysM
UHGV-0271619_35	COG	COG1388	LysM repeat	NA
UHGV-0271619_35	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0271619_36	Structural annotation	NF041909	NA	NA
UHGV-0271619_37	PHROG	phrog_6058	NA	unknown function
UHGV-0271619_37	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0271619_37	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0271619_37	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0271619_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0271619_41	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0271619_41	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0271619_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0271619_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0271619_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0271619_43	KOfam	K14059	int; integrase	NA
UHGV-0271619_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0271619_43	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0271619_43	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-0271619_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0271619_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0271619_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0271619_44	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0271619_45	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0271619_46	PHROG	phrog_16490	NA	unknown function
UHGV-0271619_46	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0271619_47	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0271619_48	PHROG	phrog_21718	NA	unknown function
UHGV-0271619_49	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0271619_49	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0271619_49	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0271619_49	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0271619_52	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0271619_52	Structural annotation	PF21277	NA	NA
UHGV-0271619_53	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0271619_53	UniRef90	UniRef90_R4K6R4	AP2 domain-containing protein	NA
UHGV-0271619_53	eggNOG-mapper	86416.Clopa_2526	AP2 domain	NA
UHGV-0271619_53	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0271619_53	Structural annotation	PF10729, PF13392	NA	NA
UHGV-0271619_55	PHROG	phrog_4105	NA	unknown function
UHGV-0271619_55	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0271619_56	PHROG	phrog_1807	tail fiber protein	tail
UHGV-0271619_56	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0271619_56	eggNOG-mapper	1242969.ATCC51562_1625	NA	NA
UHGV-0271619_56	Pfam	PF14301	NA	DUF4376
UHGV-0271619_56	Structural annotation	PF14301	NA	NA
UHGV-0271619_57	PHROG	phrog_9116	tail protein	tail
UHGV-0271619_57	UniRef90	UniRef90_UPI0013F68A02	phage tail protein	NA
UHGV-0271619_57	eggNOG-mapper	556268.OFAG_01041	tail collar domain protein	NA
UHGV-0271619_57	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0271619_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0271619_57	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0271619_58	PHROG	phrog_13893	tail protein	tail
UHGV-0271619_58	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0271619_58	COG	COG5434	Polygalacturonase	NA
UHGV-0271619_58	Structural annotation	PF03906	NA	NA
UHGV-0271619_60	PHROG	phrog_9880	NA	unknown function