UHGV-0271684

Genome information

Genome length 30,322 bps

CDS count 48

Completeness 58.51% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0271684
vOTU ID	vOTU-023837
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR479123_99_112270_round347~1359038
BioSample	SAMEA2466953
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.14
Jumbo phage	No

Genome content
Genome length	30,322 bps
GC content	53.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.68%
Average CDS length	582.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0271684_3	PHROG	phrog_28802	NA	unknown function
UHGV-0271684_3	Structural annotation	PF12510	NA	NA
UHGV-0271684_4	PHROG	phrog_20016	NA	unknown function
UHGV-0271684_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0271684_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0271684_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0271684_5	PHROG	phrog_16490	NA	unknown function
UHGV-0271684_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0271684_6	PHROG	phrog_22984	NA	unknown function
UHGV-0271684_7	PHROG	phrog_21718	NA	unknown function
UHGV-0271684_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0271684_8	PHROG	phrog_3754	NA	unknown function
UHGV-0271684_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0271684_11	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0271684_12	eggNOG-mapper	1125712.HMPREF1316_1548	NA	NA
UHGV-0271684_13	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0271684_13	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0271684_15	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0271684_16	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0271684_18	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0271684_18	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0271684_18	COG	COG3103	NA	NA
UHGV-0271684_18	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0271684_20	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0271684_20	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0271684_22	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-0271684_23	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0271684_23	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0271684_23	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-0271684_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0271684_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0271684_23	COG	COG4926	Phage-related protein	NA
UHGV-0271684_24	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0271684_25	PHROG	phrog_28918	NA	unknown function
UHGV-0271684_25	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0271684_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0271684_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0271684_26	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-0271684_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0271684_26	Structural annotation	PF06791	NA	NA
UHGV-0271684_29	PHROG	phrog_885	major tail protein	tail
UHGV-0271684_29	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0271684_29	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0271684_30	Structural annotation	PF11367	NA	NA
UHGV-0271684_31	PHROG	phrog_17977	NA	unknown function
UHGV-0271684_31	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0271684_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0271684_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0271684_33	PHROG	phrog_29	major head protein	head and packaging
UHGV-0271684_33	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0271684_33	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0271684_33	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0271684_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0271684_33	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0271684_34	PHROG	phrog_909	major head protein	head and packaging
UHGV-0271684_34	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0271684_34	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0271684_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0271684_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0271684_35	Structural annotation	PF06810	NA	NA
UHGV-0271684_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0271684_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0271684_36	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0271684_37	PHROG	phrog_859	portal protein	head and packaging
UHGV-0271684_37	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0271684_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0271684_37	COG	COG2369	NA	NA
UHGV-0271684_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0271684_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0271684_39	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0271684_39	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0271684_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0271684_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0271684_40	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0271684_40	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0271684_40	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0271684_40	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0271684_42	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0271684_43	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0271684_43	PHROG	phrog_4899	NA	unknown function
UHGV-0271684_43	UniRef90	UniRef90_A0A8D9PDW2	Putative vitamin uptake transporter	NA
UHGV-0271684_43	eggNOG-mapper	1236494.BAJN01000018_gene2066	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0271684_43	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0271684_43	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0271684_43	COG	COG1738	NA	NA
UHGV-0271684_43	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0271684_44	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0271684_44	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-0271684_44	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0271684_44	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0271684_45	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0271684_45	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0271684_45	UniRef90	UniRef90_A0A254RWY6	ParB domain-containing protein	NA
UHGV-0271684_45	eggNOG-mapper	211110.gbs1120	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0271684_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0271684_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0271684_45	COG	COG0863	DNA modification methylase	NA
UHGV-0271684_46	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0271684_46	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0271684_46	eggNOG-mapper	411483.FAEPRAA2165_02111	YodL-like	NA
UHGV-0271684_46	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0271684_47	PHROG	phrog_25027	NA	unknown function
UHGV-0271684_47	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0271684_47	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0271684_47	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN