UHGV-0271994

Genome information

Genome length 23,370 bps

CDS count 39

Completeness 61.30% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0271994
vOTU ID	vOTU-031660
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_24089_round13~8117090
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.42
Jumbo phage	No

Genome content
Genome length	23,370 bps
GC content	36.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.84%
Average CDS length	573.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0271994_1	PHROG	phrog_23093	NA	unknown function
UHGV-0271994_1	UniRef90	UniRef90_UPI000A6B3D34	NA	NA
UHGV-0271994_2	UniRef90	UniRef90_A0A0B8QUH2	Aspartyl aminopeptidase	NA
UHGV-0271994_3	PHROG	phrog_121	NA	unknown function
UHGV-0271994_3	UniRef90	UniRef90_UPI0011110CB2	NA	NA
UHGV-0271994_3	eggNOG-mapper	1229517.AMFD01000023_gene1331	NA	NA
UHGV-0271994_3	Pfam	PF07852	NA	DUF1642
UHGV-0271994_3	Structural annotation	PF07852	NA	NA
UHGV-0271994_4	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0271994_4	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0271994_4	UniRef90	UniRef90_Q9AZP1	dUTPase	NA
UHGV-0271994_4	eggNOG-mapper	35241.Q9AYX8_BPTU2	dUTPase	NA
UHGV-0271994_4	Pfam	PF00692	dUTPase	dUTPase
UHGV-0271994_4	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0271994_4	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0271994_5	PHROG	phrog_4000	NA	unknown function
UHGV-0271994_5	UniRef90	UniRef90_A0A084A7E5	Putative phage related protein	NA
UHGV-0271994_6	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0271994_6	UniRef90	UniRef90_A0A172LN93	DNA methylase	NA
UHGV-0271994_6	eggNOG-mapper	43685.Q38108_BPR1T	DNA methylation	NA
UHGV-0271994_7	KOfam	K14059	int; integrase	NA
UHGV-0271994_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0271994_7	UniRef90	UniRef90_A0A098CVM1	Tyrosine recombinase XerC	NA
UHGV-0271994_7	eggNOG-mapper	386043.lwe1203	Belongs to the 'phage' integrase family	NA
UHGV-0271994_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0271994_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0271994_7	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0271994_9	UniRef90	UniRef90_UPI001F064297	XRE family transcriptional regulator	NA
UHGV-0271994_10	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0271994_10	UniRef90	UniRef90_A0A3S3N5G9	NAD(P)-dependent oxidoreductase	NA
UHGV-0271994_10	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0271994_10	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0271994_10	Structural annotation	PF02384, MF_01872, NF012222, COG4123	NA	NA
UHGV-0271994_13	PHROG	phrog_37441	NA	unknown function
UHGV-0271994_13	eggNOG-mapper	1229517.AMFD01000023_gene1284	NA	NA
UHGV-0271994_14	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0271994_14	UniRef90	UniRef90_A0A8A1A2L3	NA	NA
UHGV-0271994_14	eggNOG-mapper	1229517.AMFD01000018_gene191	NA	NA
UHGV-0271994_14	Pfam	PF05263	NA	DUF722
UHGV-0271994_14	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0271994_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0271994_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0271994_15	UniRef90	UniRef90_UPI001F15FA1B	terminase small subunit	NA
UHGV-0271994_15	eggNOG-mapper	883081.HMPREF9698_01122	Terminase small subunit	NA
UHGV-0271994_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0271994_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0271994_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0271994_18	PHROG	phrog_10662	NA	unknown function
UHGV-0271994_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0271994_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0271994_19	UniRef90	UniRef90_A0A1X9IGF9	Terminase_6C domain-containing protein	NA
UHGV-0271994_19	eggNOG-mapper	458233.MCCL_0921	Phage terminase, large subunit	NA
UHGV-0271994_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0271994_19	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0271994_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0271994_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0271994_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0271994_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0271994_20	UniRef90	UniRef90_A0A7T4NJS3	Phage portal protein	NA
UHGV-0271994_20	eggNOG-mapper	1158609.I586_00078	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0271994_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0271994_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0271994_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0271994_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0271994_21	UniRef90	UniRef90_A0A1X9IGG3	Phage_Mu_F domain-containing protein	NA
UHGV-0271994_21	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0271994_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0271994_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0271994_21	COG	COG2369	NA	NA
UHGV-0271994_21	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0271994_23	PHROG	phrog_909	major head protein	head and packaging
UHGV-0271994_23	UniRef90	UniRef90_A0A7U8FVR7	NA	NA
UHGV-0271994_23	eggNOG-mapper	663241.C9E2J4_9CAUD	NA	NA
UHGV-0271994_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-0271994_24	UniRef90	UniRef90_UPI001073F540	major capsid protein	NA
UHGV-0271994_24	eggNOG-mapper	663241.C9E2J5_9CAUD	Phage major capsid protein E	NA
UHGV-0271994_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0271994_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0271994_25	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0271994_25	UniRef90	UniRef90_UPI0010730A93	phage head-tail connector protein	NA
UHGV-0271994_25	eggNOG-mapper	1423724.BAMM01000023_gene1909	Phage gp6-like head-tail connector protein	NA
UHGV-0271994_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0271994_25	Structural annotation	PF05135	NA	NA
UHGV-0271994_26	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0271994_26	eggNOG-mapper	1034809.SLUG_08700	NA	NA
UHGV-0271994_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0271994_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0271994_27	UniRef90	UniRef90_UPI00111124B6	HK97 gp10 family phage protein	NA
UHGV-0271994_27	eggNOG-mapper	139872.Q6SEC9_9CAUD	exonuclease activity	NA
UHGV-0271994_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0271994_27	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0271994_27	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0271994_28	PHROG	phrog_176	tail terminator	connector
UHGV-0271994_28	UniRef90	UniRef90_UPI0010746E8A	NA	NA
UHGV-0271994_28	eggNOG-mapper	930946.AEOP01000024_gene613	NA	NA
UHGV-0271994_28	Structural annotation	PF11367	NA	NA
UHGV-0271994_29	PHROG	phrog_238	major tail protein	tail
UHGV-0271994_29	UniRef90	UniRef90_A0A7T4NJV4	Phage major tail protein, TP901-1 family	NA
UHGV-0271994_29	eggNOG-mapper	1139219.I569_01373	Phage tail tube protein	NA
UHGV-0271994_29	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0271994_29	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0271994_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0271994_31	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0271994_31	Structural annotation	PF12363	NA	NA
UHGV-0271994_33	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0271994_33	UniRef90	UniRef90_A0A1X9IGH8	TMP_3 domain-containing protein	NA
UHGV-0271994_33	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0271994_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0271994_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0271994_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0271994_34	PHROG	phrog_3558	tail protein	tail
UHGV-0271994_34	UniRef90	UniRef90_A0A1X9IGI5	Prophage_tail domain-containing protein	NA
UHGV-0271994_34	eggNOG-mapper	930946.AEOP01000015_gene780	Prophage endopeptidase tail	NA
UHGV-0271994_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0271994_34	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0271994_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0271994_35	PHROG	phrog_14448	NA	unknown function
UHGV-0271994_35	UniRef90	UniRef90_A0A1X9IGH6	BppU_IgG domain-containing protein	NA
UHGV-0271994_35	eggNOG-mapper	930946.AEOP01000044_gene15	NA	NA
UHGV-0271994_35	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0271994_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0271994_38	PHROG	phrog_21844	tail protein	tail
UHGV-0271994_39	PHROG	phrog_689	holin	lysis
UHGV-0271994_39	UniRef90	UniRef90_A0A139MCY6	Phage holin	NA
UHGV-0271994_39	eggNOG-mapper	1231377.C426_0889	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0271994_39	Pfam	PF10779	Haemolysin XhlA	XhlA