UHGV-0273161

Genome information

Genome length 28,131 bps

CDS count 33

Completeness 72.40% (medium-quality)

geNomad score 0.9581

Prediction confidence Confident

Genome information
Genome ID	UHGV-0273161
vOTU ID	vOTU-023840
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR525976_119_44749_round347~1845193
BioSample	SAMN05826807
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9581
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.41
Jumbo phage	No

Genome content
Genome length	28,131 bps
GC content	28.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	86.91%
Average CDS length	743.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0273161_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0273161_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0273161_1	UniRef90	UniRef90_A0A174H5K0	Resolvase family protein	NA
UHGV-0273161_1	eggNOG-mapper	536232.CLM_2686	resolvase	NA
UHGV-0273161_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0273161_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0273161_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0273161_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0273161_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0273161_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0273161_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0273161_2	UniRef90	UniRef90_R6G471	Helix-turn-helix domain protein	NA
UHGV-0273161_2	eggNOG-mapper	1128398.Curi_c22140	Helix-turn-helix XRE-family like proteins	NA
UHGV-0273161_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0273161_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0273161_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0273161_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0273161_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0273161_3	UniRef90	UniRef90_R6GPR6	DNA-binding helix-turn-helix protein	NA
UHGV-0273161_3	eggNOG-mapper	1414720.CBYM010000002_gene594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0273161_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0273161_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0273161_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0273161_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0273161_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0273161_8	UniRef90	UniRef90_A0A174DH26	Putative transcriptional regulator	NA
UHGV-0273161_8	eggNOG-mapper	1123263.AUKY01000012_gene1993	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0273161_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0273161_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0273161_8	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0273161_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0273161_9	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0273161_9	Structural annotation	PF21578	NA	NA
UHGV-0273161_10	PHROG	phrog_824	NA	unknown function
UHGV-0273161_10	UniRef90	UniRef90_UPI00164CCD6E	VRR-NUC domain-containing protein	NA
UHGV-0273161_10	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0273161_10	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0273161_11	PHROG	phrog_98	NA	unknown function
UHGV-0273161_11	UniRef90	UniRef90_UPI0018A9284C	YopX family protein	NA
UHGV-0273161_11	eggNOG-mapper	1414720.CBYM010000002_gene585	YopX protein	NA
UHGV-0273161_11	Pfam	PF09643	YopX protein	YopX
UHGV-0273161_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0273161_13	PHROG	phrog_25509	NA	unknown function
UHGV-0273161_13	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0273161_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0273161_14	UniRef90	UniRef90_A0A1G9I4W9	Sigma-70, region 4	NA
UHGV-0273161_14	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0273161_14	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0273161_14	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0273161_15	PHROG	phrog_1315	NA	unknown function
UHGV-0273161_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0273161_16	UniRef90	UniRef90_UPI00164ABAC9	HNH endonuclease	NA
UHGV-0273161_16	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0273161_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0273161_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0273161_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0273161_17	UniRef90	UniRef90_UPI00164B2843	RNA polymerase subunit sigma-70	NA
UHGV-0273161_17	eggNOG-mapper	1307436.PBF_22053	NA	NA
UHGV-0273161_17	COG	COG5484	NA	NA
UHGV-0273161_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0273161_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0273161_18	UniRef90	UniRef90_UPI00164CCF79	terminase large subunit	NA
UHGV-0273161_18	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0273161_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0273161_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0273161_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0273161_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0273161_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0273161_19	UniRef90	UniRef90_UPI00164CC1C1	phage portal protein	NA
UHGV-0273161_19	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0273161_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0273161_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0273161_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0273161_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0273161_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0273161_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0273161_20	UniRef90	UniRef90_A0A316S6S6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0273161_20	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0273161_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0273161_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0273161_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0273161_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0273161_21	UniRef90	UniRef90_UPI00164AB0C3	phage major capsid protein	NA
UHGV-0273161_21	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0273161_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0273161_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0273161_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0273161_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0273161_22	PHROG	phrog_749	NA	unknown function
UHGV-0273161_22	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0273161_22	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0273161_23	PHROG	phrog_11176	head-tail adaptor	connector
UHGV-0273161_23	UniRef90	UniRef90_UPI00164ACD7E	phage head closure protein	NA
UHGV-0273161_23	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-0273161_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0273161_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0273161_23	Structural annotation	PF05521, PF07405, TIGR01563, COG5614	NA	NA
UHGV-0273161_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0273161_24	UniRef90	UniRef90_UPI00164C9F08	HK97 gp10 family phage protein	NA
UHGV-0273161_24	eggNOG-mapper	1476973.JMMB01000007_gene1766	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0273161_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0273161_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0273161_24	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0273161_25	PHROG	phrog_78	tail terminator	connector
UHGV-0273161_25	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0273161_26	PHROG	phrog_88	major tail protein	tail
UHGV-0273161_26	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0273161_26	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0273161_26	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0273161_26	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0273161_27	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0273161_28	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0273161_28	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0273161_28	UniRef90	UniRef90_UPI00164B849B	phage tail tape measure protein	NA
UHGV-0273161_28	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0273161_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0273161_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0273161_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0273161_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0273161_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0273161_29	UniRef90	UniRef90_UPI001625AB57	phage tail family protein	NA
UHGV-0273161_29	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0273161_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0273161_29	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0273161_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0273161_29	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0273161_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0273161_30	UniRef90	UniRef90_UPI001C8C6847	phage tail protein	NA
UHGV-0273161_30	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0273161_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0273161_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0273161_30	COG	COG4926	Phage-related protein	NA
UHGV-0273161_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0273161_31	PHROG	phrog_16573	NA	unknown function
UHGV-0273161_31	UniRef90	UniRef90_UPI0010556061	BppU family phage baseplate upper protein	NA
UHGV-0273161_31	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0273161_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0273161_31	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0273161_31	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0273161_32	UniRef90	UniRef90_UPI00140FBD8E	BppU family phage baseplate upper protein	NA
UHGV-0273161_32	eggNOG-mapper	1441930.Z042_23200	NA	NA
UHGV-0273161_33	eggNOG-mapper	1499684.CCNP01000023_gene3170	Bacteriophage holin family	NA
UHGV-0273161_33	COG	COG4824	Phage-related holin (Lysis protein)	NA