UHGV-0273474

Genome information

Genome length 25,381 bps

CDS count 30

Completeness 50.36% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0273474
vOTU ID	vOTU-030372
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_37442_round347~733976
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.72
Jumbo phage	No

Genome content
Genome length	25,381 bps
GC content	40.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	91.26%
Average CDS length	775.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0273474_1	eggNOG-mapper	546269.HMPREF0389_01415	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0273474_1	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0273474_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0273474_2	PHROG	phrog_1794	amidase	lysis
UHGV-0273474_2	UniRef90	UniRef90_A0A3D2HTX7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0273474_2	eggNOG-mapper	1203606.HMPREF1526_00582	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0273474_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0273474_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0273474_2	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0273474_3	PHROG	phrog_21233	NA	unknown function
UHGV-0273474_3	UniRef90	UniRef90_A0A3D2HUL1	Holin	NA
UHGV-0273474_3	eggNOG-mapper	1120978.KB894083_gene892	Bacteriophage holin family	NA
UHGV-0273474_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0273474_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0273474_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0273474_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0273474_4	PHROG	phrog_372	tail protein	tail
UHGV-0273474_4	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-0273474_4	eggNOG-mapper	1406785.U5PU90_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0273474_4	Pfam	PF05895	NA	DUF859
UHGV-0273474_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0273474_5	UniRef90	UniRef90_A0A3D2HU54	Prophage_tail domain-containing protein	NA
UHGV-0273474_5	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0273474_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0273474_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0273474_5	COG	COG4926	Phage-related protein	NA
UHGV-0273474_5	Structural annotation	PF14594, PF04862, TIGR01665, NF033675, COG4926, COG4935	NA	NA
UHGV-0273474_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0273474_6	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-0273474_6	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0273474_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0273474_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0273474_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0273474_6	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0273474_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0273474_7	UniRef90	UniRef90_A0A0B0IN21	Phage-related minor tail protein	NA
UHGV-0273474_7	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-0273474_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0273474_7	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0273474_10	PHROG	phrog_2115	tail protein	tail
UHGV-0273474_10	eggNOG-mapper	1216932.CM240_0682	NA	NA
UHGV-0273474_10	Structural annotation	PF11836	NA	NA
UHGV-0273474_11	PHROG	phrog_88	major tail protein	tail
UHGV-0273474_11	UniRef90	UniRef90_A0A3D2HTU5	Phage tail protein	NA
UHGV-0273474_11	eggNOG-mapper	573061.Clocel_3970	phage major tail protein, phi13 family	NA
UHGV-0273474_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0273474_11	COG	COG5492	NA	NA
UHGV-0273474_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0273474_12	PHROG	phrog_78	tail terminator	connector
UHGV-0273474_12	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0273474_12	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0273474_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0273474_13	UniRef90	UniRef90_R6MSS6	Phage protein HK97 gp10 family	NA
UHGV-0273474_13	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0273474_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0273474_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0273474_13	Structural annotation	TIGR01725	NA	NA
UHGV-0273474_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0273474_14	UniRef90	UniRef90_A0A3D2HTW6	Head-tail adaptor protein	NA
UHGV-0273474_14	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-0273474_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0273474_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0273474_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0273474_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0273474_15	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-0273474_15	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0273474_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0273474_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0273474_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0273474_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0273474_16	UniRef90	UniRef90_A0A3D2HQG5	Phage major capsid protein	NA
UHGV-0273474_16	eggNOG-mapper	1235802.C823_01519	Phage capsid family	NA
UHGV-0273474_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0273474_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0273474_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0273474_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0273474_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0273474_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0273474_17	UniRef90	UniRef90_A0A374FZB5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0273474_17	eggNOG-mapper	573061.Clocel_3976	Belongs to the peptidase S14 family	NA
UHGV-0273474_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0273474_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0273474_17	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0273474_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0273474_18	UniRef90	UniRef90_A0A3D2HSG0	Phage portal protein	NA
UHGV-0273474_18	eggNOG-mapper	397290.C810_01254	Phage portal protein	NA
UHGV-0273474_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0273474_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0273474_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0273474_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0273474_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0273474_21	UniRef90	UniRef90_A0A374UQ81	Terminase large subunit	NA
UHGV-0273474_21	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-0273474_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0273474_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0273474_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0273474_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0273474_23	PHROG	phrog_2945	NA	unknown function
UHGV-0273474_23	UniRef90	UniRef90_A0A0V8QIN0	Hydrogenase maturation protein HypF	NA
UHGV-0273474_23	eggNOG-mapper	1235802.C823_05282	NA	NA
UHGV-0273474_24	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0273474_24	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0273474_24	UniRef90	UniRef90_A0A292S0B2	Gamma-glutamylcyclotransferase	NA
UHGV-0273474_24	eggNOG-mapper	573061.Clocel_3981	AIG2-like family	NA
UHGV-0273474_24	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0273474_24	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0273474_25	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0273474_25	UniRef90	UniRef90_A0A412UPJ3	Alpha-L-fucosidase	NA
UHGV-0273474_25	eggNOG-mapper	411468.CLOSCI_00214	COG NOG18822 non supervised orthologous group	NA
UHGV-0273474_25	AcrCatalog	cluster_58247	NA	NA
UHGV-0273474_25	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0273474_25	Structural annotation	PF12224	NA	NA
UHGV-0273474_26	PHROG	phrog_3782	NA	unknown function
UHGV-0273474_26	UniRef90	UniRef90_A0A413QHB7	NA	NA
UHGV-0273474_26	eggNOG-mapper	573061.Clocel_3983	NA	NA
UHGV-0273474_26	Pfam	PF14192	NA	DUF4314
UHGV-0273474_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0273474_26	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0273474_27	PHROG	phrog_289	GTP-binding domain	other
UHGV-0273474_27	UniRef90	UniRef90_A0A374FYR2	NA	NA
UHGV-0273474_27	eggNOG-mapper	877414.ATWA01000045_gene1862	DNA mediated transformation	NA
UHGV-0273474_27	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0273474_27	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0273474_27	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0273474_28	UniRef90	UniRef90_A0A354M8P8	TraY domain-containing protein	NA
UHGV-0273474_28	eggNOG-mapper	1378168.N510_01349	NA	NA
UHGV-0273474_28	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0273474_29	eggNOG-mapper	1408311.JNJM01000013_gene2303	NA	NA
UHGV-0273474_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0273474_30	PHROG	phrog_38038	NA	unknown function
UHGV-0273474_30	UniRef90	UniRef90_A0A3D2HPE4	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0273474_30	eggNOG-mapper	573061.Clocel_3986	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0273474_30	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0273474_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0273474_30	COG	COG0270	DNA-cytosine methylase	NA