UHGV-0274152

Genome information

Genome length 29,704 bps

CDS count 39

Completeness 100.00% (complete)

geNomad score 0.9434

Prediction confidence Confident

Genome information
Genome ID	UHGV-0274152
vOTU ID	vOTU-049924
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5936021_119_35021_round347~5123665
BioSample	SAMN07521866
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9434
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.04
Jumbo phage	No

Genome content
Genome length	29,704 bps
GC content	44.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	86.06%
Average CDS length	659.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0274152_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0274152_1	UniRef90	UniRef90_UPI001D062D3B	NA	NA
UHGV-0274152_1	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0274152_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0274152_1	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0274152_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0274152_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0274152_2	UniRef90	UniRef90_UPI001D08211C	ATP-binding protein	NA
UHGV-0274152_2	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0274152_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0274152_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0274152_2	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0274152_3	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0274152_3	UniRef90	UniRef90_UPI001D06849A	replisome organizer	NA
UHGV-0274152_3	eggNOG-mapper	931626.Awo_c31180	DnaD domain protein	NA
UHGV-0274152_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0274152_3	Structural annotation	TIGR01714	NA	NA
UHGV-0274152_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0274152_4	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0274152_4	UniRef90	UniRef90_UPI001D05F033	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0274152_4	eggNOG-mapper	33035.JPJF01000071_gene4466	crossover junction endodeoxyribonuclease activity	NA
UHGV-0274152_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0274152_4	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0274152_6	PHROG	phrog_398	NA	unknown function
UHGV-0274152_6	UniRef90	UniRef90_UPI001D082F29	putative HNHc nuclease	NA
UHGV-0274152_6	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0274152_6	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0274152_6	Structural annotation	PF16784	NA	NA
UHGV-0274152_7	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0274152_7	UniRef90	UniRef90_A0A8G1WU89	NA	NA
UHGV-0274152_7	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0274152_7	Pfam	PF06378	NA	DUF1071
UHGV-0274152_7	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0274152_10	UniRef90	UniRef90_UPI001D08BC4F	helix-turn-helix domain-containing protein	NA
UHGV-0274152_10	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0274152_10	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0274152_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0274152_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0274152_11	UniRef90	UniRef90_UPI001D0959F0	helix-turn-helix domain-containing protein	NA
UHGV-0274152_11	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0274152_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0274152_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0274152_11	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0274152_12	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0274152_12	UniRef90	UniRef90_UPI001D068087	Ltp family lipoprotein	NA
UHGV-0274152_12	eggNOG-mapper	1125712.HMPREF1316_2395	Host cell surface-exposed lipoprotein	NA
UHGV-0274152_12	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0274152_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0274152_12	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0274152_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0274152_14	PHROG	phrog_95	integrase	integration and excision
UHGV-0274152_14	UniRef90	UniRef90_UPI001D06068F	recombinase family protein	NA
UHGV-0274152_14	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0274152_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0274152_14	Pfam	PF07508	Recombinase	Recombinase
UHGV-0274152_14	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0274152_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0274152_14	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0274152_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0274152_15	PHROG	phrog_291	endolysin	lysis
UHGV-0274152_15	UniRef90	UniRef90_UPI001D09151B	glycoside hydrolase family 25 protein	NA
UHGV-0274152_15	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0274152_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0274152_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0274152_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0274152_15	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0274152_16	PHROG	phrog_443	holin	lysis
UHGV-0274152_16	UniRef90	UniRef90_UPI001D0979AE	holin	NA
UHGV-0274152_16	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0274152_16	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0274152_16	Structural annotation	PF16945	NA	NA
UHGV-0274152_17	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0274152_18	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0274152_18	PHROG	phrog_819	tail protein	tail
UHGV-0274152_18	UniRef90	UniRef90_A0A7G5N2U2	Collagen-like protein	NA
UHGV-0274152_18	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0274152_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0274152_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0274152_19	PHROG	phrog_16164	NA	unknown function
UHGV-0274152_19	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0274152_19	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0274152_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0274152_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0274152_21	UniRef90	UniRef90_UPI00148B170A	tyrosine-type recombinase/integrase	NA
UHGV-0274152_21	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0274152_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0274152_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0274152_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0274152_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0274152_23	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0274152_23	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0274152_23	UniRef90	UniRef90_UPI001A9B4A5E	collagen-like protein	NA
UHGV-0274152_23	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0274152_24	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0274152_24	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0274152_25	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0274152_25	PHROG	phrog_11037	NA	unknown function
UHGV-0274152_25	UniRef90	UniRef90_A0A4P6M1D5	Peptidoglycan endopeptidase RipA	NA
UHGV-0274152_25	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0274152_25	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0274152_25	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0274152_25	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0274152_26	PHROG	phrog_6616	tail protein	tail
UHGV-0274152_26	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0274152_26	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0274152_26	COG	COG4926	Phage-related protein	NA
UHGV-0274152_26	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0274152_27	PHROG	phrog_1194	NA	unknown function
UHGV-0274152_27	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0274152_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0274152_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0274152_28	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0274152_28	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0274152_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0274152_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0274152_29	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0274152_30	PHROG	phrog_8355	NA	unknown function
UHGV-0274152_30	UniRef90	UniRef90_UPI001D093271	bacteriophage Gp15 family protein	NA
UHGV-0274152_30	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0274152_31	PHROG	phrog_8300	NA	unknown function
UHGV-0274152_31	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0274152_31	Structural annotation	PF06854	NA	NA
UHGV-0274152_32	PHROG	phrog_820	major tail protein	tail
UHGV-0274152_32	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0274152_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0274152_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0274152_33	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0274152_33	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0274152_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0274152_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0274152_34	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0274152_35	PHROG	phrog_8710	NA	unknown function
UHGV-0274152_35	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0274152_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0274152_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0274152_36	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-0274152_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0274152_37	UniRef90	UniRef90_UPI001D07C24A	capsid protein	NA
UHGV-0274152_37	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0274152_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0274152_38	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0274152_38	UniRef90	UniRef90_UPI001D061099	phage terminase large subunit	NA
UHGV-0274152_38	eggNOG-mapper	33035.JPJF01000093_gene2258	TIGRFAM Phage	NA
UHGV-0274152_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0274152_38	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0274152_38	COG	COG5410	NA	NA
UHGV-0274152_38	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0274152_39	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0274152_39	UniRef90	UniRef90_UPI001D098071	helix-turn-helix domain-containing protein	NA
UHGV-0274152_39	eggNOG-mapper	1536772.R70723_06635	transposase activity	NA
UHGV-0274152_39	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0274152_39	COG	COG2963	Transposase InsE and inactivated derivatives	NA