UHGV-0275943

Genome information

Genome length 27,626 bps

CDS count 42

Completeness 80.88% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0275943
vOTU ID	vOTU-031694
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR1930253_119_68729_round347~1391869
BioSample	NA
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.15
Jumbo phage	No

Genome content
Genome length	27,626 bps
GC content	46.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.96%
Average CDS length	617.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0275943_1	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0275943_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0275943_2	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0275943_2	UniRef90	UniRef90_UPI001967E4F4	BppU family phage baseplate upper protein	NA
UHGV-0275943_2	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0275943_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0275943_2	Structural annotation	PF10651, PF04721, NF038186	NA	NA
UHGV-0275943_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0275943_3	UniRef90	UniRef90_A0A0D8IVK1	Prophage_tail domain-containing protein	NA
UHGV-0275943_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0275943_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0275943_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0275943_3	COG	COG4926	Phage-related protein	NA
UHGV-0275943_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0275943_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0275943_4	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0275943_4	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-0275943_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0275943_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0275943_5	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0275943_5	eggNOG-mapper	1140001.I571_01843	phage tail tape measure protein	NA
UHGV-0275943_5	COG	COG5412	Phage-related protein	NA
UHGV-0275943_5	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0275943_7	PHROG	phrog_88	major tail protein	tail
UHGV-0275943_7	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0275943_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0275943_7	COG	COG5492	NA	NA
UHGV-0275943_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0275943_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0275943_8	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0275943_8	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0275943_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0275943_8	Structural annotation	TIGR01725	NA	NA
UHGV-0275943_9	PHROG	phrog_78	tail terminator	connector
UHGV-0275943_9	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0275943_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0275943_10	PHROG	phrog_19734	NA	unknown function
UHGV-0275943_10	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0275943_10	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0275943_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0275943_11	PHROG	phrog_2550	NA	unknown function
UHGV-0275943_11	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0275943_11	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0275943_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0275943_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0275943_12	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0275943_12	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0275943_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0275943_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0275943_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0275943_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0275943_13	KOfam	K06904	NA	NA
UHGV-0275943_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0275943_13	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-0275943_13	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0275943_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0275943_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0275943_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0275943_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0275943_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0275943_14	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0275943_14	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0275943_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0275943_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0275943_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0275943_14	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0275943_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0275943_15	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0275943_15	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0275943_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0275943_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0275943_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0275943_15	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0275943_16	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0275943_16	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0275943_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0275943_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0275943_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0275943_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0275943_17	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0275943_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0275943_19	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0275943_19	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0275943_20	PHROG	phrog_924	NA	unknown function
UHGV-0275943_20	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0275943_20	Pfam	PF04448	NA	DUF551
UHGV-0275943_20	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0275943_24	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0275943_25	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0275943_26	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0275943_26	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0275943_26	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0275943_28	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0275943_28	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0275943_28	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0275943_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0275943_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0275943_30	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-0275943_30	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0275943_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0275943_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0275943_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0275943_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0275943_31	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0275943_31	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0275943_31	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0275943_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0275943_31	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0275943_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0275943_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0275943_32	UniRef90	UniRef90_A0A0W7TNC8	Single-stranded DNA-binding protein	NA
UHGV-0275943_32	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0275943_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0275943_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0275943_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0275943_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0275943_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0275943_33	PHROG	phrog_7566	NA	unknown function
UHGV-0275943_33	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0275943_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0275943_34	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0275943_34	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0275943_35	PHROG	phrog_14970	NA	unknown function
UHGV-0275943_35	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0275943_35	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0275943_35	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0275943_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0275943_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0275943_37	PHROG	phrog_1029	NA	unknown function
UHGV-0275943_37	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0275943_37	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0275943_38	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0275943_38	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0275943_38	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0275943_39	PHROG	phrog_1123	NA	unknown function
UHGV-0275943_39	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0275943_40	AcrCatalog	cluster_35670	NA	NA
UHGV-0275943_40	Structural annotation	NF042413	NA	NA
UHGV-0275943_41	Structural annotation	PF12728	NA	NA
UHGV-0275943_42	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0275943_42	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0275943_42	UniRef90	UniRef90_UPI001EDCE91E	site-specific DNA-methyltransferase	NA
UHGV-0275943_42	eggNOG-mapper	696281.Desru_0371	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0275943_42	PADLOC	MTase_II_00016	Type II methyltransferase	RM
UHGV-0275943_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0275943_42	COG	COG0863	DNA modification methylase	NA