UHGV-0278828

Genome information

Genome length 43,477 bps

CDS count 59

Completeness 93.37% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0278828
vOTU ID	vOTU-010771
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_83007_round8-12~4003271
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.67
Jumbo phage	No

Genome content
Genome length	43,477 bps
GC content	45.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.46%
Average CDS length	669.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0278828_1	KOfam	K14059	int; integrase	NA
UHGV-0278828_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0278828_1	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0278828_1	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-0278828_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0278828_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0278828_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0278828_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0278828_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0278828_4	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0278828_4	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0278828_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0278828_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0278828_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0278828_7	PHROG	phrog_6058	NA	unknown function
UHGV-0278828_7	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0278828_7	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0278828_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0278828_8	Structural annotation	NF041909	NA	NA
UHGV-0278828_9	PHROG	phrog_14367	NA	unknown function
UHGV-0278828_9	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0278828_9	Pfam	PF01476	LysM domain	LysM
UHGV-0278828_9	COG	COG1388	LysM repeat	NA
UHGV-0278828_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0278828_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0278828_11	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0278828_11	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0278828_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0278828_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0278828_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0278828_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0278828_12	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0278828_12	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0278828_12	eggNOG-mapper	429009.Adeg_0117	Helix-turn-helix XRE-family like proteins	NA
UHGV-0278828_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0278828_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0278828_12	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0278828_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0278828_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0278828_14	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0278828_14	eggNOG-mapper	1234664.AMRO01000024_gene1791	RecT family	NA
UHGV-0278828_14	Pfam	PF03837	RecT family	RecT
UHGV-0278828_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0278828_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0278828_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0278828_15	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0278828_15	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0278828_15	eggNOG-mapper	1178540.BA70_18625	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0278828_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0278828_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0278828_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0278828_15	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0278828_19	PHROG	phrog_10714	NA	unknown function
UHGV-0278828_19	Structural annotation	PF21173	NA	NA
UHGV-0278828_20	PHROG	phrog_3878	NA	unknown function
UHGV-0278828_22	PHROG	phrog_2776	NA	unknown function
UHGV-0278828_22	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0278828_22	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0278828_22	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0278828_24	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0278828_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0278828_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0278828_26	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0278828_26	eggNOG-mapper	160799.PBOR_24230	Endodeoxyribonuclease RusA	NA
UHGV-0278828_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0278828_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0278828_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0278828_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0278828_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0278828_27	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-0278828_27	eggNOG-mapper	546268.NEISUBOT_05135	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0278828_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0278828_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0278828_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0278828_27	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0278828_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0278828_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0278828_34	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0278828_34	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0278828_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0278828_34	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0278828_34	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0278828_36	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0278828_36	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0278828_36	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0278828_36	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0278828_36	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0278828_37	PHROG	phrog_528	NA	unknown function
UHGV-0278828_37	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0278828_38	PHROG	phrog_458	protease	other
UHGV-0278828_38	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0278828_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-0278828_39	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0278828_39	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0278828_39	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0278828_39	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0278828_40	PHROG	phrog_427	NA	unknown function
UHGV-0278828_40	Structural annotation	PF21190	NA	NA
UHGV-0278828_41	PHROG	phrog_394	tail protein	tail
UHGV-0278828_41	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0278828_41	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0278828_41	Structural annotation	PF17212	NA	NA
UHGV-0278828_42	PHROG	phrog_376	tail protein	tail
UHGV-0278828_42	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0278828_42	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0278828_42	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0278828_43	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0278828_43	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0278828_44	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0278828_44	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0278828_44	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0278828_45	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0278828_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0278828_45	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0278828_46	PHROG	phrog_9880	NA	unknown function
UHGV-0278828_46	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0278828_46	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0278828_46	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0278828_48	PHROG	phrog_32960	NA	unknown function
UHGV-0278828_48	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0278828_48	COG	COG5434	Polygalacturonase	NA
UHGV-0278828_50	PHROG	phrog_4105	NA	unknown function
UHGV-0278828_50	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0278828_52	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0278828_52	Structural annotation	PF21277	NA	NA
UHGV-0278828_56	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0278828_56	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0278828_56	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0278828_56	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0278828_57	PHROG	phrog_21718	NA	unknown function
UHGV-0278828_58	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0278828_59	PHROG	phrog_16490	NA	unknown function
UHGV-0278828_59	eggNOG-mapper	445972.ANACOL_01880	NA	NA