UHGV-0279983

Genome information

Genome length 23,280 bps

CDS count 27

Completeness 57.32% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0279983
vOTU ID	vOTU-031728
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5963133_141_3471_round347~4103615
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.44
Jumbo phage	No

Genome content
Genome length	23,280 bps
GC content	51.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	94.15%
Average CDS length	814.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0279983_2	PHROG	phrog_29765	NA	unknown function
UHGV-0279983_2	UniRef90	UniRef90_A0A2Z5H073	NA	NA
UHGV-0279983_2	eggNOG-mapper	1115512.EH105704_01_01320	NA	NA
UHGV-0279983_2	Pfam	PF09327	NA	DUF1983
UHGV-0279983_3	eggNOG-mapper	35703.DQ02_24225	NA	NA
UHGV-0279983_3	Structural annotation	PF11730	NA	NA
UHGV-0279983_4	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0279983_4	UniRef90	UniRef90_A0A837F8C8	Glycosyltransferase	NA
UHGV-0279983_4	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0279983_4	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0279983_4	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0279983_5	PHROG	phrog_11851	NA	unknown function
UHGV-0279983_6	PHROG	phrog_21164	NA	unknown function
UHGV-0279983_7	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0279983_7	eggNOG-mapper	1399774.JDWH01000016_gene3435	Glycosyl transferase, family 2	NA
UHGV-0279983_7	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0279983_7	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0279983_8	PHROG	phrog_17731	NA	unknown function
UHGV-0279983_9	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0279983_9	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0279983_9	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0279983_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0279983_9	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0279983_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0279983_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0279983_10	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0279983_10	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0279983_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0279983_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0279983_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0279983_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0279983_11	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-0279983_11	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-0279983_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0279983_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0279983_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0279983_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0279983_12	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0279983_12	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0279983_12	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-0279983_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0279983_12	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0279983_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0279983_13	UniRef90	UniRef90_A0A7T0DT05	Phage major capsid protein	NA
UHGV-0279983_13	eggNOG-mapper	741091.Rahaq_1809	capsid protein	NA
UHGV-0279983_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0279983_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0279983_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0279983_13	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0279983_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0279983_14	UniRef90	UniRef90_A0A837F2Q3	NA	NA
UHGV-0279983_14	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-0279983_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0279983_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0279983_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0279983_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-0279983_15	UniRef90	UniRef90_A0A330G495	Head-tail adaptor protein	NA
UHGV-0279983_15	eggNOG-mapper	517433.PanABDRAFT_0993	Phage head-tail joining protein	NA
UHGV-0279983_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0279983_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0279983_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0279983_16	PHROG	phrog_347	tail terminator	connector
UHGV-0279983_16	UniRef90	UniRef90_Q6UAX2	Gp10	NA
UHGV-0279983_16	eggNOG-mapper	371042.NG99_26185	NA	NA
UHGV-0279983_16	Structural annotation	PF12691	NA	NA
UHGV-0279983_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0279983_17	UniRef90	UniRef90_A0A133LNJ5	Phage protein, HK97 gp10 family	NA
UHGV-0279983_17	eggNOG-mapper	517433.PanABDRAFT_0995	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0279983_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0279983_17	Structural annotation	TIGR01725	NA	NA
UHGV-0279983_18	PHROG	phrog_158	major tail protein	tail
UHGV-0279983_18	UniRef90	UniRef90_A0A1M5IW55	Phage tail tube protein family protein	NA
UHGV-0279983_18	eggNOG-mapper	371042.NG99_26175	Phage tail tube protein family	NA
UHGV-0279983_18	Pfam	PF16463	Phage tail tube protein family	Phage_TTP_13
UHGV-0279983_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0279983_19	PHROG	phrog_25875	tail assembly chaperone	tail
UHGV-0279983_19	UniRef90	UniRef90_A0A133LNI0	Phage tail protein	NA
UHGV-0279983_19	eggNOG-mapper	1453496.AT03_15210	Phage tail assembly chaperone protein, TAC	NA
UHGV-0279983_19	Pfam	PF16462	Phage tail assembly chaperone protein, TAC	Phage_TAC_14
UHGV-0279983_19	Structural annotation	PF16462, TIGR01674	NA	NA
UHGV-0279983_20	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0279983_20	UniRef90	UniRef90_A0A133LNY9	Phage tail tape measure protein, TP901 family	NA
UHGV-0279983_20	eggNOG-mapper	1453496.AT03_15205	COG5281, Phage-related minor tail protein	NA
UHGV-0279983_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0279983_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0279983_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0279983_20	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0279983_21	PHROG	phrog_14	minor tail protein	tail
UHGV-0279983_21	UniRef90	UniRef90_A0A156KFG0	Phage tail protein	NA
UHGV-0279983_21	eggNOG-mapper	255431.Q6UAW6_9CAUD	Phage minor tail protein	NA
UHGV-0279983_21	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0279983_21	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0279983_22	PHROG	phrog_18	minor tail protein	tail
UHGV-0279983_22	UniRef90	UniRef90_Q9MCS1	Gp18	NA
UHGV-0279983_22	eggNOG-mapper	906668.G8C7J7_9CAUD	Phage minor tail protein L	NA
UHGV-0279983_22	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0279983_22	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0279983_22	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0279983_23	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0279983_23	PHROG	phrog_30	minor tail protein	tail
UHGV-0279983_23	UniRef90	UniRef90_K7PGR2	Minor tail protein	NA
UHGV-0279983_23	eggNOG-mapper	1147150.K7PJV6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0279983_23	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0279983_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0279983_23	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0279983_24	PHROG	phrog_13007	NA	unknown function
UHGV-0279983_25	PHROG	phrog_32	tail assembly protein	tail
UHGV-0279983_25	UniRef90	UniRef90_A0A0N8LSQ9	Phage tail protein	NA
UHGV-0279983_25	eggNOG-mapper	1147151.K7PHE5_9CAUD	virus tail assembly	NA
UHGV-0279983_25	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0279983_26	PHROG	phrog_2589	tail protein	tail
UHGV-0279983_26	UniRef90	UniRef90_UPI001C66E8A0	NA	NA
UHGV-0279983_26	eggNOG-mapper	716541.ECL_01715	Fibronectin type 3 domain	NA
UHGV-0279983_26	Pfam	PF09327	NA	DUF1983
UHGV-0279983_26	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0279983_26	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-0279983_27	PHROG	phrog_557	outer membrane protein	other
UHGV-0279983_27	eggNOG-mapper	1006000.GKAS_03242	NA	NA