UHGV-0282568

Genome information

Genome length 33,159 bps

CDS count 66

Completeness 53.44% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0282568
vOTU ID	vOTU-031751
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_179981_round13~2499807
BioSample	SAMEA2466932
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.02
Jumbo phage	No

Genome content
Genome length	33,159 bps
GC content	32.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.15%
Average CDS length	460.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0282568_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0282568_1	UniRef90	UniRef90_A0A2H4J4V9	Putative Tmp	NA
UHGV-0282568_1	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0282568_1	COG	COG1511	NA	NA
UHGV-0282568_1	Structural annotation	PF20155, MF_04138, TIGR01760	NA	NA
UHGV-0282568_2	PHROG	phrog_706	NA	unknown function
UHGV-0282568_2	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0282568_2	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0282568_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0282568_2	Structural annotation	PF06854	NA	NA
UHGV-0282568_3	PHROG	phrog_11299	NA	unknown function
UHGV-0282568_3	Structural annotation	PF10666	NA	NA
UHGV-0282568_4	PHROG	phrog_3099	NA	unknown function
UHGV-0282568_4	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0282568_4	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0282568_5	PHROG	phrog_3266	tail completion	connector
UHGV-0282568_5	Structural annotation	PF12691	NA	NA
UHGV-0282568_7	PHROG	phrog_3366	NA	unknown function
UHGV-0282568_7	Pfam	PF20536	NA	DUF6751
UHGV-0282568_7	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0282568_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0282568_9	PHROG	phrog_1378	NA	unknown function
UHGV-0282568_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0282568_10	UniRef90	UniRef90_A0A488ACU7	Major capsid protein	NA
UHGV-0282568_10	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0282568_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0282568_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0282568_11	UniRef90	UniRef90_A0A1C5UDW0	Phage minor structural protein GP20	NA
UHGV-0282568_11	eggNOG-mapper	665956.HMPREF1032_03067	Phage minor structural protein GP20	NA
UHGV-0282568_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0282568_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0282568_12	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0282568_12	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0282568_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0282568_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0282568_13	PHROG	phrog_4897	kinase	other
UHGV-0282568_13	UniRef90	UniRef90_UPI00073E7D17	NA	NA
UHGV-0282568_13	eggNOG-mapper	330398.A8ATS6_9CAUD	NA	NA
UHGV-0282568_13	Pfam	PF11753	NA	DUF3310
UHGV-0282568_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0282568_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0282568_14	UniRef90	UniRef90_A0A2A2ILZ5	Terminase	NA
UHGV-0282568_14	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0282568_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0282568_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0282568_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0282568_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0282568_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0282568_16	Pfam	PF06129	Chordopoxvirus G3 protein	Chordopox_G3
UHGV-0282568_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0282568_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0282568_18	UniRef90	UniRef90_R6SKL2	Phage terminase small subunit	NA
UHGV-0282568_18	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-0282568_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0282568_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0282568_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0282568_20	PHROG	phrog_21026	NA	unknown function
UHGV-0282568_24	PHROG	phrog_22292	NA	unknown function
UHGV-0282568_25	PHROG	phrog_22292	NA	unknown function
UHGV-0282568_26	PHROG	phrog_22292	NA	unknown function
UHGV-0282568_33	PHROG	phrog_25027	NA	unknown function
UHGV-0282568_33	UniRef90	UniRef90_A0A373PN04	ArdcN domain-containing protein	NA
UHGV-0282568_33	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0282568_33	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0282568_36	PHROG	phrog_33130	NA	unknown function
UHGV-0282568_37	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0282568_37	PHROG	phrog_17417	NA	unknown function
UHGV-0282568_37	UniRef90	UniRef90_A0A3R6XAL2	Cell wall hydrolase	NA
UHGV-0282568_37	eggNOG-mapper	742740.HMPREF9474_02309	Cell Wall Hydrolase	NA
UHGV-0282568_37	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0282568_37	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0282568_38	Pfam	PF19474	NA	DUF6011
UHGV-0282568_39	KOfam	K02340	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	NA
UHGV-0282568_39	PHROG	phrog_20214	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0282568_39	UniRef90	UniRef90_A0A1W7AF03	DNA polymerase III subunit gamma	NA
UHGV-0282568_39	eggNOG-mapper	871584.D9ZNJ1_9CAUD	NA	NA
UHGV-0282568_39	Structural annotation	PF21694, PF06144, MF_01509, NF005134, COG1466	NA	NA
UHGV-0282568_40	KOfam	K02341	holB; DNA polymerase III subunit delta' [EC:2.7.7.7]	NA
UHGV-0282568_40	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0282568_40	UniRef90	UniRef90_D9ZNJ0	Putative DNA polymerase III	NA
UHGV-0282568_40	eggNOG-mapper	871584.D9ZNJ0_9CAUD	DNA polymerase III, delta subunit	NA
UHGV-0282568_40	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0282568_40	Structural annotation	PF13177, MF_04162, NF004047, COG2812	NA	NA
UHGV-0282568_42	KOfam	K02343	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	NA
UHGV-0282568_42	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0282568_42	UniRef90	UniRef90_D9ZNI9	Putative DNA polymerase III	NA
UHGV-0282568_42	eggNOG-mapper	871584.D9ZNI9_9CAUD	four-way junction helicase activity	NA
UHGV-0282568_42	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0282568_42	Pfam	PF12169	DNA polymerase III subunits gamma and tau domain III	DNA_pol3_gamma3
UHGV-0282568_42	NCBIFam	TIGR02397.1	DNA polymerase III subunit gamma/tau	NA
UHGV-0282568_42	Structural annotation	PF13177, PF12169, PF17864, MF_01509, NF004046, COG2812	NA	NA
UHGV-0282568_44	PHROG	phrog_4973	NA	unknown function
UHGV-0282568_44	UniRef90	UniRef90_R5Y7B1	Conserved domain protein	NA
UHGV-0282568_44	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0282568_44	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0282568_44	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0282568_45	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0282568_45	eggNOG-mapper	59241.E7DN89_BPDP1	NA	NA
UHGV-0282568_45	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0282568_48	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0282568_48	UniRef90	UniRef90_A0A1Q6KR19	DNA_ligase_aden domain-containing protein	NA
UHGV-0282568_48	eggNOG-mapper	720555.BATR1942_09670	NAD-dependent DNA ligase adenylation domain	NA
UHGV-0282568_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0282568_51	PHROG	phrog_30343	NA	unknown function
UHGV-0282568_51	eggNOG-mapper	397291.C804_00939	NA	NA
UHGV-0282568_51	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0282568_52	UniRef90	UniRef90_G3MB19	Gp639	NA
UHGV-0282568_52	Pfam	PF19474	NA	DUF6011
UHGV-0282568_52	Structural annotation	PF19474	NA	NA
UHGV-0282568_53	eggNOG-mapper	742735.HMPREF9467_03139	NA	NA
UHGV-0282568_53	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0282568_56	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0282568_56	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0282568_56	UniRef90	UniRef90_A0A843GH78	RECA_3 domain-containing protein	NA
UHGV-0282568_56	eggNOG-mapper	59241.E7DN79_BPDP1	DNA-dependent ATPase activity	NA
UHGV-0282568_56	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0282568_56	Pfam	PF21096	RecA C-terminal domain	RecA_C
UHGV-0282568_56	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0282568_60	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0282568_60	UniRef90	UniRef90_A0A098TQT2	Holliday junction endonuclease	NA
UHGV-0282568_60	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0282568_60	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0282568_60	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0282568_63	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0282568_63	UniRef90	UniRef90_E7DN75	RecB	NA
UHGV-0282568_63	eggNOG-mapper	871584.D9ZNH8_9CAUD	nuclease activity	NA
UHGV-0282568_63	Structural annotation	PF10926, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0282568_65	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0282568_65	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0282568_65	UniRef90	UniRef90_A0A7C6S6U3	DNA polymerase III subunit beta	NA
UHGV-0282568_65	eggNOG-mapper	871584.D9ZNH7_9CAUD	3'-5' exonuclease activity	NA
UHGV-0282568_65	Structural annotation	PF00712, PF02768, MF_00317, TIGR00663, COG0592	NA	NA