UHGV-0282888

Genome information

vOTU vOTU-020149

Genome length 34,531 bps

CDS count 44

Completeness 88.79% (medium-quality)

geNomad score 0.9704

Prediction confidence Confident

Genome information
Genome ID	UHGV-0282888
vOTU ID	vOTU-020149
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR8133843_141_5450_round1256~5265494
BioSample	SAMN10342724
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9704
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	112.25
Jumbo phage	No

Genome content
Genome length	34,531 bps
GC content	41.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.15%
Average CDS length	718.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0282888_2	Pfam	PF19839	Ribbon-helix-helix protein	RHH_9
UHGV-0282888_3	KOfam	K14059	int; integrase	NA
UHGV-0282888_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0282888_3	UniRef90	UniRef90_E4LAC6	Site-specific recombinase, phage integrase family	NA
UHGV-0282888_3	eggNOG-mapper	910314.HMPREF9220_0756	Belongs to the 'phage' integrase family	NA
UHGV-0282888_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0282888_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0282888_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0282888_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0282888_4	Structural annotation	PF03895	NA	NA
UHGV-0282888_6	PHROG	phrog_15524	terminase large subunit	head and packaging
UHGV-0282888_6	UniRef90	UniRef90_UPI0018D58E1D	phage terminase large subunit	NA
UHGV-0282888_6	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0282888_6	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0282888_6	COG	COG5410	NA	NA
UHGV-0282888_7	PHROG	phrog_2081	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0282888_7	UniRef90	UniRef90_A0A3S6R2L4	AP2/ERF domain-containing protein	NA
UHGV-0282888_7	eggNOG-mapper	1115512.EH105704_05_00190	NA	NA
UHGV-0282888_7	Structural annotation	PF17375, COG4481	NA	NA
UHGV-0282888_8	PHROG	phrog_4758	terminase large subunit	head and packaging
UHGV-0282888_8	UniRef90	UniRef90_A0A2D0PE39	Phage DNA packaging	NA
UHGV-0282888_8	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0282888_8	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0282888_8	COG	COG5410	NA	NA
UHGV-0282888_8	Structural annotation	PF05876, COG5410	NA	NA
UHGV-0282888_10	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0282888_10	PHROG	phrog_3513	endolysin	lysis
UHGV-0282888_10	UniRef90	UniRef90_E4LA87	Putative muramidase-2	NA
UHGV-0282888_10	eggNOG-mapper	910314.HMPREF9220_0717	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0282888_10	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0282888_10	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0282888_10	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0282888_11	PHROG	phrog_920	holin	lysis
UHGV-0282888_11	UniRef90	UniRef90_A0A1M6NKZ0	Phage holin T7 family, holin superfamily II	NA
UHGV-0282888_11	eggNOG-mapper	1542498.A0A088FT74_9CAUD	Pfam:Phage_holin_2_2	NA
UHGV-0282888_11	Pfam	PF10746	Phage holin T7 family, holin superfamily II	Phage_holin_2_2
UHGV-0282888_11	Structural annotation	PF10746, MF_04108	NA	NA
UHGV-0282888_13	PHROG	phrog_4242	tail fiber protein	tail
UHGV-0282888_13	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0282888_13	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0282888_13	Structural annotation	PF03906, COG5448	NA	NA
UHGV-0282888_15	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-0282888_15	UniRef90	UniRef90_A0A1M6MGY6	Phage_lysozyme2 domain-containing protein	NA
UHGV-0282888_15	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-0282888_15	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0282888_15	Structural annotation	MF_04121, NF038016, COG1705	NA	NA
UHGV-0282888_16	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-0282888_16	Structural annotation	MF_04122	NA	NA
UHGV-0282888_17	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0282888_17	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-0282888_18	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0282888_18	eggNOG-mapper	1150626.PHAMO_180129	NA	NA
UHGV-0282888_18	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0282888_18	Structural annotation	PF13420, MF_02210, NF040504, COG0456	NA	NA
UHGV-0282888_19	PHROG	phrog_457	tail protein	tail
UHGV-0282888_19	UniRef90	UniRef90_F1D037	Tail tubular protein B	NA
UHGV-0282888_19	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-0282888_19	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0282888_20	PHROG	phrog_446	tail protein	tail
UHGV-0282888_20	UniRef90	UniRef90_UPI001032D6E0	phage tail protein	NA
UHGV-0282888_20	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0282888_20	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0282888_20	Structural annotation	PF17212	NA	NA
UHGV-0282888_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0282888_21	UniRef90	UniRef90_A0A413R0P7	Phage capsid protein	NA
UHGV-0282888_21	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0282888_21	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0282888_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0282888_22	UniRef90	UniRef90_A0A4Y1NTG3	Capsid protein	NA
UHGV-0282888_22	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0282888_23	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0282888_23	UniRef90	UniRef90_E4LA98	Phage T7 capsid assembly protein	NA
UHGV-0282888_23	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-0282888_23	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0282888_23	Structural annotation	PF05396	NA	NA
UHGV-0282888_24	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0282888_24	UniRef90	UniRef90_E4LA99	Head-to-tail joining protein	NA
UHGV-0282888_24	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0282888_24	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0282888_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0282888_25	PHROG	phrog_1320	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0282888_26	Pfam	PF17570	Bacteriophage T7-like, protein 6.7	T7-like_gp67
UHGV-0282888_27	Structural annotation	PF10911	NA	NA
UHGV-0282888_28	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0282888_28	Structural annotation	PF09390, MF_01127, NF041716, COG0456	NA	NA
UHGV-0282888_29	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0282888_29	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0282888_29	UniRef90	UniRef90_E4LAA3	Putative Exodeoxyribonuclease	NA
UHGV-0282888_29	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0282888_29	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0282888_29	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0282888_29	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0282888_30	PHROG	phrog_1334	NA	unknown function
UHGV-0282888_30	Structural annotation	PF21715	NA	NA
UHGV-0282888_31	Structural annotation	PF18129, MF_00613, NF002745, COG2139	NA	NA
UHGV-0282888_32	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0282888_32	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-0282888_32	UniRef90	UniRef90_A0A1M6MFE6	DNA-directed DNA polymerase	NA
UHGV-0282888_32	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0282888_32	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0282888_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0282888_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0282888_32	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0282888_33	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0282888_33	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0282888_33	UniRef90	UniRef90_A0A1M6MES9	Twinkle protein	NA
UHGV-0282888_33	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0282888_33	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0282888_33	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0282888_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0282888_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0282888_33	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0282888_33	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0282888_34	UniRef90	UniRef90_E4LAA8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0282888_34	Structural annotation	PF01510, MF_04111	NA	NA
UHGV-0282888_35	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0282888_35	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0282888_35	UniRef90	UniRef90_A0A2Z2U7X4	Endonuclease-like protein	NA
UHGV-0282888_35	eggNOG-mapper	913183.E5RV06_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-0282888_35	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0282888_35	Structural annotation	PF05367, COG1787	NA	NA
UHGV-0282888_36	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0282888_36	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0282888_36	UniRef90	UniRef90_UPI0010327CA7	NA	NA
UHGV-0282888_36	eggNOG-mapper	910314.HMPREF9220_0740	NA	NA
UHGV-0282888_36	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0282888_36	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0282888_37	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0282888_37	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0282888_37	UniRef90	UniRef90_A0A2G9NUI7	dUTP diphosphatase (Fragment)	NA
UHGV-0282888_37	eggNOG-mapper	203124.Tery_2083	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0282888_37	Pfam	PF00692	dUTPase	dUTPase
UHGV-0282888_37	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0282888_39	PHROG	phrog_236	nucleotide kinase	other
UHGV-0282888_39	UniRef90	UniRef90_A0A413R0M9	NA	NA
UHGV-0282888_39	eggNOG-mapper	1432658.V5UQP0_9CAUD	NA	NA
UHGV-0282888_39	Pfam	PF11753	NA	DUF3310
UHGV-0282888_39	Structural annotation	PF11753	NA	NA
UHGV-0282888_44	PHROG	phrog_21026	NA	unknown function