UHGV-0282948

Genome information

Genome length 22,989 bps

CDS count 36

Completeness 63.63% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0282948
vOTU ID	vOTU-023883
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR1297787_99_80395_round347~3330237
BioSample	SAMEA3888904
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.99
Jumbo phage	No

Genome content
Genome length	22,989 bps
GC content	54.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.69%
Average CDS length	601.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0282948_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-0282948_1	UniRef90	UniRef90_UPI0007730369	phage portal protein	NA
UHGV-0282948_1	eggNOG-mapper	1226322.HMPREF1545_04054	phage portal protein, SPP1	NA
UHGV-0282948_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0282948_1	Structural annotation	PF05133, TIGR01538	NA	NA
UHGV-0282948_2	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0282948_2	UniRef90	UniRef90_A0A1C6AIQ5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0282948_2	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0282948_2	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0282948_2	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0282948_2	COG	COG2369	NA	NA
UHGV-0282948_2	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0282948_3	eggNOG-mapper	903814.ELI_3212	NA	NA
UHGV-0282948_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0282948_4	UniRef90	UniRef90_U2S0A2	Putative phage minor structural protein GP20	NA
UHGV-0282948_4	eggNOG-mapper	1118054.CAGW01000102_gene4698	Phage minor structural protein GP20	NA
UHGV-0282948_4	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0282948_4	Structural annotation	PF06810	NA	NA
UHGV-0282948_5	UniRef90	UniRef90_A0A644YJM4	S-l_SbsC_C domain-containing protein	NA
UHGV-0282948_5	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0282948_6	Structural annotation	PF12949, PF18885	NA	NA
UHGV-0282948_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0282948_7	UniRef90	UniRef90_UPI0006821A34	phage head-tail connector protein	NA
UHGV-0282948_7	eggNOG-mapper	1226322.HMPREF1545_04047	NA	NA
UHGV-0282948_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0282948_7	Structural annotation	PF05135	NA	NA
UHGV-0282948_8	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0282948_8	UniRef90	UniRef90_UPI001958CF31	ABC transporter ATP-binding protein	NA
UHGV-0282948_8	eggNOG-mapper	1226322.HMPREF1545_04046	NA	NA
UHGV-0282948_8	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0282948_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0282948_9	UniRef90	UniRef90_UPI0012B5F359	HK97 gp10 family phage protein	NA
UHGV-0282948_9	eggNOG-mapper	1121121.KB894312_gene3153	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0282948_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0282948_9	Structural annotation	PF17395, COG5005	NA	NA
UHGV-0282948_10	PHROG	phrog_525	NA	unknown function
UHGV-0282948_10	UniRef90	UniRef90_M9L968	Outer membrane protein	NA
UHGV-0282948_10	eggNOG-mapper	1226322.HMPREF1545_04045	NA	NA
UHGV-0282948_10	Pfam	PF20765	NA	DUF6838
UHGV-0282948_10	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0282948_11	PHROG	phrog_966	NA	unknown function
UHGV-0282948_12	PHROG	phrog_279	tail sheath	tail
UHGV-0282948_12	UniRef90	UniRef90_U2QRN1	Tat pathway signal sequence domain protein	NA
UHGV-0282948_12	eggNOG-mapper	1226322.HMPREF1545_04043	PFAM Phage tail sheath protein	NA
UHGV-0282948_12	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0282948_12	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0282948_12	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0282948_12	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0282948_13	PHROG	phrog_365	tail protein	tail
UHGV-0282948_13	UniRef90	UniRef90_A0A1C6AK33	Phage-like element PBSX protein xkdM	NA
UHGV-0282948_13	eggNOG-mapper	1226322.HMPREF1545_04042	Phage tail tube protein	NA
UHGV-0282948_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0282948_13	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0282948_14	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0282948_14	UniRef90	UniRef90_A0A1C6AK30	Phage XkdN-like protein	NA
UHGV-0282948_14	eggNOG-mapper	1226322.HMPREF1545_04041	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0282948_14	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0282948_14	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0282948_15	PHROG	phrog_20560	NA	unknown function
UHGV-0282948_15	eggNOG-mapper	931276.Cspa_c07820	NA	NA
UHGV-0282948_16	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0282948_16	UniRef90	UniRef90_A0A1Q6KQ15	TMP_3 domain-containing protein	NA
UHGV-0282948_16	eggNOG-mapper	1121344.JHZO01000003_gene963	tape measure	NA
UHGV-0282948_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0282948_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0282948_16	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0282948_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0282948_17	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0282948_17	PHROG	phrog_380	endolysin	lysis
UHGV-0282948_17	UniRef90	UniRef90_A0A1Q6KQ30	LysM domain-containing protein	NA
UHGV-0282948_17	eggNOG-mapper	1226322.HMPREF1545_04039	LysM domain	NA
UHGV-0282948_17	Pfam	PF01476	LysM domain	LysM
UHGV-0282948_17	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0282948_17	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0282948_18	PHROG	phrog_400	tail protein	tail
UHGV-0282948_18	UniRef90	UniRef90_W4V9W9	Phage-like element PBSX protein XkdQ	NA
UHGV-0282948_18	eggNOG-mapper	1226322.HMPREF1545_04038	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0282948_18	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0282948_18	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0282948_19	PHROG	phrog_579	NA	unknown function
UHGV-0282948_19	UniRef90	UniRef90_UPI0006828886	NA	NA
UHGV-0282948_19	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-0282948_19	Pfam	PF10844	NA	DUF2577
UHGV-0282948_19	Structural annotation	PF10844	NA	NA
UHGV-0282948_20	PHROG	phrog_120	baseplate protein	tail
UHGV-0282948_20	UniRef90	UniRef90_U2QSJ0	Phage protein XkdS domain protein	NA
UHGV-0282948_20	eggNOG-mapper	1226322.HMPREF1545_04036	NA	NA
UHGV-0282948_20	Pfam	PF10934	NA	DUF2634
UHGV-0282948_20	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0282948_20	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0282948_21	PHROG	phrog_1608	tail protein	tail
UHGV-0282948_21	UniRef90	UniRef90_U2S087	Baseplate J-like protein	NA
UHGV-0282948_21	eggNOG-mapper	1226322.HMPREF1545_04035	baseplate J-like protein	NA
UHGV-0282948_21	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0282948_21	COG	COG3299	NA	NA
UHGV-0282948_21	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0282948_22	PHROG	phrog_521	tail protein	tail
UHGV-0282948_22	UniRef90	UniRef90_UPI001956D7D3	NA	NA
UHGV-0282948_22	eggNOG-mapper	1226322.HMPREF1545_04034	NA	NA
UHGV-0282948_22	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0282948_22	COG	COG3778	NA	NA
UHGV-0282948_22	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0282948_23	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0282948_23	Structural annotation	PF12571	NA	NA
UHGV-0282948_24	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0282948_24	UniRef90	UniRef90_A0A1M6M548	23S rRNA-intervening sequence protein	NA
UHGV-0282948_24	eggNOG-mapper	1226322.HMPREF1545_04032	NA	NA
UHGV-0282948_24	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0282948_25	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0282948_25	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0282948_25	UniRef90	UniRef90_U2QSI4	Reverse transcriptase	NA
UHGV-0282948_25	eggNOG-mapper	1226322.HMPREF1545_04030	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0282948_25	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0282948_25	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0282948_25	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0282948_25	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0282948_26	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0282948_26	UniRef90	UniRef90_U2S084	Fibronectin type-III domain-containing protein	NA
UHGV-0282948_26	eggNOG-mapper	1226322.HMPREF1545_04029	cellulose binding	NA
UHGV-0282948_26	Pfam	PF19789	NA	DUF6273
UHGV-0282948_26	COG	COG4447	NA	NA
UHGV-0282948_26	Structural annotation	PF16323, PF18911, MF_04116, NF010681, COG3401	NA	NA
UHGV-0282948_27	PHROG	phrog_18593	NA	unknown function
UHGV-0282948_27	UniRef90	UniRef90_U2S8P1	Carbohydrate binding domain protein	NA
UHGV-0282948_27	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-0282948_27	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0282948_27	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0282948_28	PHROG	phrog_1863	NA	unknown function
UHGV-0282948_28	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0282948_28	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0282948_29	PHROG	phrog_17876	NA	unknown function
UHGV-0282948_29	eggNOG-mapper	1226322.HMPREF1545_04026	NA	NA
UHGV-0282948_31	PHROG	phrog_20388	endolysin	lysis
UHGV-0282948_31	UniRef90	UniRef90_U2S079	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0282948_31	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0282948_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0282948_31	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0282948_31	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0282948_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0282948_32	UniRef90	UniRef90_UPI0012B5F359	HK97 gp10 family phage protein	NA
UHGV-0282948_32	eggNOG-mapper	768710.DesyoDRAFT_1113	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0282948_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0282948_32	Structural annotation	PF17395, COG5005	NA	NA
UHGV-0282948_33	PHROG	phrog_20920	NA	unknown function
UHGV-0282948_33	UniRef90	UniRef90_UPI001A9B8BD8	SHOCT domain-containing protein	NA
UHGV-0282948_33	eggNOG-mapper	1226322.HMPREF1545_04022	NA	NA
UHGV-0282948_33	Structural annotation	PF16674	NA	NA
UHGV-0282948_34	UniRef90	UniRef90_U2Q8Q2	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0282948_34	eggNOG-mapper	1226322.HMPREF1545_04021	Helix-turn-helix XRE-family like proteins	NA
UHGV-0282948_34	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0282948_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0282948_36	PHROG	phrog_13890	NA	unknown function
UHGV-0282948_36	UniRef90	UniRef90_U2QSH7	Ribbon-helix-helix protein, CopG family	NA
UHGV-0282948_36	eggNOG-mapper	657322.FPR_28500	NA	NA
UHGV-0282948_36	Structural annotation	PF10723, NF010256, COG4710	NA	NA