UHGV-0283233

Genome information

Genome length 30,223 bps

CDS count 40

Completeness 75.52% (medium-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0283233
vOTU ID	vOTU-031757
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR526037_119_22247_round347~1268087
BioSample	SAMN09278412
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.6
Jumbo phage	No

Genome content
Genome length	30,223 bps
GC content	49.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	84.88%
Average CDS length	642.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0283233_1	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0283233_1	PHROG	phrog_2082	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0283233_1	UniRef90	UniRef90_A0A377LHV9	Exodeoxyribonuclease 8	NA
UHGV-0283233_1	eggNOG-mapper	155864.EDL933_1962	3' exoribonuclease, RNase T-like	NA
UHGV-0283233_1	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0283233_1	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0283233_1	Structural annotation	PF16473, PF06630, MF_00157, NF007259, NF005927, COG5018	NA	NA
UHGV-0283233_2	PHROG	phrog_1092	NA	unknown function
UHGV-0283233_2	UniRef90	UniRef90_A0A0A0H248	NA	NA
UHGV-0283233_2	eggNOG-mapper	155864.EDL933_2024	NA	NA
UHGV-0283233_2	Pfam	PF07358	NA	DUF1482
UHGV-0283233_2	Structural annotation	PF07358	NA	NA
UHGV-0283233_3	KOfam	K22304	dicB; cell division inhibition protein DicB	NA
UHGV-0283233_3	PHROG	phrog_1251	NA	unknown function
UHGV-0283233_3	UniRef90	UniRef90_A0A066QMV2	Cell division inhibition protein	NA
UHGV-0283233_3	eggNOG-mapper	155864.EDL933_2025	DicB protein	NA
UHGV-0283233_3	Pfam	PF05358	DicB protein	DicB
UHGV-0283233_4	PHROG	phrog_1744	NA	unknown function
UHGV-0283233_4	UniRef90	UniRef90_B7LE77	YdfC protein	NA
UHGV-0283233_4	eggNOG-mapper	1440052.EAKF1_ch0489	NA	NA
UHGV-0283233_5	PHROG	phrog_21318	NA	unknown function
UHGV-0283233_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0283233_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0283233_6	UniRef90	UniRef90_A0A066SSH7	Helix-turn-helix domain-containing protein	NA
UHGV-0283233_6	eggNOG-mapper	2342.SOPEG_1878	Peptidase S24-like	NA
UHGV-0283233_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0283233_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0283233_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0283233_6	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0283233_7	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0283233_7	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0283233_7	UniRef90	UniRef90_A0A066PWR9	DNA-binding transcriptional regulator DicC	NA
UHGV-0283233_7	eggNOG-mapper	471881.PROPEN_04405	DNA-binding transcriptional regulator Cro	NA
UHGV-0283233_7	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0283233_8	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0283233_8	UniRef90	UniRef90_A7ZKN9	YdaT_toxin domain-containing protein	NA
UHGV-0283233_8	eggNOG-mapper	199310.c1411	Putative bacterial toxin ydaT	NA
UHGV-0283233_8	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0283233_8	Structural annotation	PF06254	NA	NA
UHGV-0283233_9	PHROG	phrog_3729	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0283233_9	UniRef90	UniRef90_A0A660HBX7	Phage replisome organizer	NA
UHGV-0283233_9	eggNOG-mapper	199310.c1412	NA	NA
UHGV-0283233_9	COG	COG3756	NA	NA
UHGV-0283233_10	PHROG	phrog_142	Ren-like exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0283233_10	UniRef90	UniRef90_A0A0H0GA29	NA	NA
UHGV-0283233_10	eggNOG-mapper	502347.ESCAB7627_3532	NA	NA
UHGV-0283233_10	Pfam	PF06163	NA	DUF977
UHGV-0283233_10	Structural annotation	PF06163, MF_01586, NF011960, COG3388	NA	NA
UHGV-0283233_11	PHROG	phrog_21495	NA	unknown function
UHGV-0283233_11	UniRef90	UniRef90_A0A0L7ACS6	Chaperonin	NA
UHGV-0283233_11	eggNOG-mapper	283942.IL1820	NA	NA
UHGV-0283233_12	KOfam	K18919	hokC_D; protein HokC/D	NA
UHGV-0283233_12	PHROG	phrog_251	MokW-like host killing	moron, auxiliary metabolic gene and host takeover
UHGV-0283233_12	UniRef90	UniRef90_A0A066R554	Hok/Gef family protein	NA
UHGV-0283233_12	eggNOG-mapper	10730.Q9XJM4_BP933	Hok/gef family	NA
UHGV-0283233_12	Pfam	PF01848	Hok/gef family	HOK_GEF
UHGV-0283233_12	Structural annotation	NF007279	NA	NA
UHGV-0283233_13	PHROG	phrog_16082	NA	unknown function
UHGV-0283233_13	eggNOG-mapper	944435.AXAJ01000002_gene4620	NA	NA
UHGV-0283233_14	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0283233_14	UniRef90	UniRef90_A0A3P5DSB8	HNHc domain-containing protein	NA
UHGV-0283233_14	eggNOG-mapper	1440052.EAKF1_ch0476c	Putative HNHc nuclease	NA
UHGV-0283233_14	Pfam	PF06147	NA	DUF968
UHGV-0283233_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0283233_14	Structural annotation	PF06147	NA	NA
UHGV-0283233_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0283233_15	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0283233_15	UniRef90	UniRef90_A0A0K4AB69	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0283233_15	eggNOG-mapper	198214.SF2040	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0283233_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0283233_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0283233_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0283233_16	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0283233_16	UniRef90	UniRef90_A0A369DZ74	Antitermination protein	NA
UHGV-0283233_16	eggNOG-mapper	701347.Entcl_1855	Phage antitermination protein Q	NA
UHGV-0283233_16	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0283233_16	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0283233_17	PHROG	phrog_26468	NA	unknown function
UHGV-0283233_18	PHROG	phrog_27630	NA	unknown function
UHGV-0283233_19	PHROG	phrog_3243	NA	unknown function
UHGV-0283233_19	eggNOG-mapper	1344012.ATMI01000023_gene75	NA	NA
UHGV-0283233_19	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0283233_20	PHROG	phrog_9876	holin	lysis
UHGV-0283233_20	UniRef90	UniRef90_A0A066SYA7	Class II holin family protein	NA
UHGV-0283233_20	eggNOG-mapper	1440052.EAKF1_ch0472c	Bacteriophage P21 holin S	NA
UHGV-0283233_20	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0283233_20	Structural annotation	PF04971	NA	NA
UHGV-0283233_21	PHROG	phrog_406	NA	unknown function
UHGV-0283233_21	UniRef90	UniRef90_A0A811VUY7	Putative prophage protein	NA
UHGV-0283233_21	eggNOG-mapper	469008.B21_01344	NA	NA
UHGV-0283233_21	Pfam	PF07041	NA	DUF1327
UHGV-0283233_21	Structural annotation	PF07041	NA	NA
UHGV-0283233_22	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0283233_22	PHROG	phrog_7	endolysin	lysis
UHGV-0283233_22	UniRef90	UniRef90_A0A066T2U5	Lysozyme	NA
UHGV-0283233_22	eggNOG-mapper	199310.c1436	Corresponds to locus_tag	NA
UHGV-0283233_22	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0283233_22	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0283233_22	HAMAP	MF_04110	Endolysin	NA
UHGV-0283233_22	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0283233_23	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0283233_23	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0283233_23	UniRef90	UniRef90_A0A192C810	Rz	NA
UHGV-0283233_23	eggNOG-mapper	1440052.EAKF1_ch4478	Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall (By similarity)	NA
UHGV-0283233_23	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0283233_23	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0283233_23	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0283233_24	PHROG	phrog_260	Bor-like outer membrane protein	other
UHGV-0283233_24	UniRef90	UniRef90_A0A0H0EQW8	Bor protein	NA
UHGV-0283233_24	eggNOG-mapper	469008.B21_00516	Bor protein	NA
UHGV-0283233_24	Pfam	PF06291	Bor protein	Lambda_Bor
UHGV-0283233_24	Structural annotation	PF06291	NA	NA
UHGV-0283233_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0283233_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0283233_25	UniRef90	UniRef90_A0A0L6XVE5	HNH endonuclease	NA
UHGV-0283233_25	eggNOG-mapper	103807.Q8W633_9CAUD	endonuclease activity	NA
UHGV-0283233_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0283233_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0283233_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0283233_26	UniRef90	UniRef90_A0A0J2B4L5	Phage terminase small subunit P27 family	NA
UHGV-0283233_26	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0283233_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0283233_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0283233_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0283233_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0283233_27	UniRef90	UniRef90_A0A4C4IQY6	Phage terminase large subunit	NA
UHGV-0283233_27	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0283233_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0283233_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0283233_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0283233_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0283233_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0283233_28	UniRef90	UniRef90_A0A0L7ACU7	Phage portal protein	NA
UHGV-0283233_28	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0283233_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0283233_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0283233_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0283233_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0283233_29	KOfam	K06904	NA	NA
UHGV-0283233_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0283233_29	UniRef90	UniRef90_E6BSD6	Phage prohead protease, HK97 family	NA
UHGV-0283233_29	eggNOG-mapper	1082705.JIBP01000010_gene168	Prohead protease	NA
UHGV-0283233_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0283233_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0283233_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0283233_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0283233_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0283233_30	UniRef90	UniRef90_A0A376VIQ7	Prophage major capsid protein	NA
UHGV-0283233_30	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0283233_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0283233_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0283233_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0283233_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0283233_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0283233_31	UniRef90	UniRef90_A0A0G3JSG3	Phage gp6-like head-tail connector protein	NA
UHGV-0283233_31	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0283233_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0283233_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0283233_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0283233_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0283233_32	UniRef90	UniRef90_A0A0G3JU98	Head-tail adaptor protein	NA
UHGV-0283233_32	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0283233_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0283233_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0283233_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0283233_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0283233_33	PHROG	phrog_23409	NA	unknown function
UHGV-0283233_33	UniRef90	UniRef90_A0A0A6SE05	HK97 gp10 family phage protein	NA
UHGV-0283233_33	eggNOG-mapper	1440052.EAKF1_ch0458c	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0283233_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0283233_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0283233_33	Structural annotation	TIGR01725	NA	NA
UHGV-0283233_34	PHROG	phrog_347	tail terminator	connector
UHGV-0283233_34	UniRef90	UniRef90_D3GXN5	Putative prophage protein	NA
UHGV-0283233_34	eggNOG-mapper	1440052.EAKF1_ch0457c	NA	NA
UHGV-0283233_34	Pfam	PF11367	NA	DUF3168
UHGV-0283233_34	Structural annotation	PF11367	NA	NA
UHGV-0283233_35	PHROG	phrog_158	major tail protein	tail
UHGV-0283233_35	UniRef90	UniRef90_E6BSD0	Ig-like domain-containing protein	NA
UHGV-0283233_35	eggNOG-mapper	1440052.EAKF1_ch0456c	Immunoglobulin	NA
UHGV-0283233_35	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0283233_35	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0283233_36	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-0283233_36	UniRef90	UniRef90_E1JDM6	Phage tail assembly chaperone	NA
UHGV-0283233_36	eggNOG-mapper	1440052.EAKF1_ch0455c	tail assembly chaperone	NA
UHGV-0283233_36	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0283233_36	Structural annotation	PF06222	NA	NA
UHGV-0283233_37	PHROG	phrog_14766	tail protein	tail
UHGV-0283233_37	UniRef90	UniRef90_A0A2Y0AVP5	NA	NA
UHGV-0283233_37	eggNOG-mapper	1440052.EAKF1_ch0454c	NA	NA
UHGV-0283233_37	Pfam	PF13227	NA	DUF4035
UHGV-0283233_37	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0283233_38	PHROG	phrog_19302	NA	unknown function
UHGV-0283233_38	UniRef90	UniRef90_A0A8A5HTV4	Phage tail tape measure protein	NA
UHGV-0283233_38	eggNOG-mapper	1440052.EAKF1_ch0452c	sister chromatid segregation	NA
UHGV-0283233_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0283233_38	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0283233_38	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0283233_38	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0283233_38	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0283233_38	Structural annotation	PF00529, MF_04138, TIGR01541, NF038345, COG5281	NA	NA
UHGV-0283233_39	PHROG	phrog_14	minor tail protein	tail
UHGV-0283233_39	UniRef90	UniRef90_A0A066T2Q8	Phage tail protein	NA
UHGV-0283233_39	eggNOG-mapper	1440052.EAKF1_ch0451c	Phage minor tail protein	NA
UHGV-0283233_39	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0283233_39	COG	COG4718	Phage tail protein	NA
UHGV-0283233_39	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0283233_40	PHROG	phrog_4199	minor tail protein	tail
UHGV-0283233_40	UniRef90	UniRef90_A0A0J2E0J5	Phage minor tail protein	NA
UHGV-0283233_40	eggNOG-mapper	1440052.EAKF1_ch0450c	Phage minor tail protein L	NA
UHGV-0283233_40	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0283233_40	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0283233_40	COG	COG4672	Phage tail protein	NA
UHGV-0283233_40	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA