UHGV-0283465

Genome information

vOTU vOTU-001962

Genome length 39,664 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0283465
vOTU ID	vOTU-001962
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_64073_round14~2423126
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.61
Jumbo phage	No

Genome content
Genome length	39,664 bps
GC content	52.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	87.71%
Average CDS length	494.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0283465_2	PHROG	phrog_16304	NA	unknown function
UHGV-0283465_2	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0283465_2	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0283465_2	Pfam	PF19808	NA	DUF6291
UHGV-0283465_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0283465_2	Structural annotation	PF19808	NA	NA
UHGV-0283465_3	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0283465_3	PHROG	phrog_8446	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0283465_3	UniRef90	UniRef90_G5SMF8	HNH endonuclease domain protein	NA
UHGV-0283465_3	eggNOG-mapper	762968.HMPREF9441_00533	HNH endonuclease	NA
UHGV-0283465_3	Pfam	PF19808	NA	DUF6291
UHGV-0283465_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0283465_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0283465_3	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0283465_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0283465_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0283465_5	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0283465_5	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0283465_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0283465_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0283465_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0283465_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0283465_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0283465_6	PHROG	phrog_7566	NA	unknown function
UHGV-0283465_6	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0283465_6	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0283465_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0283465_7	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0283465_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0283465_7	Structural annotation	PF05772	NA	NA
UHGV-0283465_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0283465_8	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0283465_8	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0283465_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0283465_8	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0283465_13	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0283465_13	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0283465_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0283465_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0283465_14	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0283465_14	eggNOG-mapper	697329.Rumal_2813	Helix-turn-helix XRE-family like proteins	NA
UHGV-0283465_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0283465_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0283465_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0283465_15	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0283465_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0283465_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0283465_15	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0283465_16	Structural annotation	PF03885	NA	NA
UHGV-0283465_19	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0283465_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0283465_19	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0283465_20	KOfam	K14059	int; integrase	NA
UHGV-0283465_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0283465_20	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-0283465_20	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0283465_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0283465_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0283465_20	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0283465_21	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0283465_22	Structural annotation	PF12510	NA	NA
UHGV-0283465_23	PHROG	phrog_20016	NA	unknown function
UHGV-0283465_23	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0283465_23	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0283465_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0283465_24	PHROG	phrog_16490	NA	unknown function
UHGV-0283465_24	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0283465_25	PHROG	phrog_22984	NA	unknown function
UHGV-0283465_26	PHROG	phrog_21718	NA	unknown function
UHGV-0283465_26	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0283465_27	PHROG	phrog_3754	NA	unknown function
UHGV-0283465_27	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0283465_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0283465_29	PHROG	phrog_435	endolysin	lysis
UHGV-0283465_29	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0283465_29	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0283465_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0283465_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0283465_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0283465_29	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0283465_30	PHROG	phrog_1129	holin	lysis
UHGV-0283465_30	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0283465_30	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0283465_30	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0283465_30	Structural annotation	PF06946	NA	NA
UHGV-0283465_31	KOfam	K24492	LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3	NA
UHGV-0283465_31	PHROG	phrog_35892	NA	unknown function
UHGV-0283465_31	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0283465_31	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0283465_31	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0283465_32	PHROG	phrog_15594	NA	unknown function
UHGV-0283465_32	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0283465_32	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0283465_33	PHROG	phrog_1863	NA	unknown function
UHGV-0283465_33	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0283465_34	PHROG	phrog_372	tail protein	tail
UHGV-0283465_34	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0283465_34	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0283465_34	Pfam	PF05895	NA	DUF859
UHGV-0283465_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0283465_34	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0283465_35	PHROG	phrog_3558	tail protein	tail
UHGV-0283465_35	UniRef90	UniRef90_A0A847D2L1	Prophage_tail domain-containing protein	NA
UHGV-0283465_35	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0283465_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0283465_35	COG	COG4926	Phage-related protein	NA
UHGV-0283465_35	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0283465_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0283465_36	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0283465_36	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0283465_36	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0283465_37	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0283465_37	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0283465_37	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0283465_37	COG	COG1511	NA	NA
UHGV-0283465_37	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0283465_38	PHROG	phrog_7115	NA	unknown function
UHGV-0283465_38	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0283465_38	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0283465_38	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0283465_38	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0283465_40	PHROG	phrog_885	major tail protein	tail
UHGV-0283465_40	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0283465_40	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0283465_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0283465_41	PHROG	phrog_17405	head protein	head and packaging
UHGV-0283465_41	Structural annotation	PF11367	NA	NA
UHGV-0283465_42	PHROG	phrog_17977	NA	unknown function
UHGV-0283465_42	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0283465_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0283465_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0283465_44	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0283465_44	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0283465_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0283465_45	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0283465_45	Structural annotation	PF06810	NA	NA
UHGV-0283465_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0283465_46	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0283465_46	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0283465_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0283465_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0283465_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0283465_47	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0283465_47	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0283465_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0283465_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0283465_47	COG	COG2369	NA	NA
UHGV-0283465_47	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0283465_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0283465_48	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0283465_48	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0283465_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0283465_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0283465_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0283465_49	PHROG	phrog_10250	NA	unknown function
UHGV-0283465_49	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0283465_49	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0283465_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0283465_49	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0283465_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0283465_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0283465_49	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0283465_50	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0283465_50	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0283465_50	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0283465_50	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0283465_50	Structural annotation	PF16677	NA	NA
UHGV-0283465_54	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0283465_54	Structural annotation	TIGR01636	NA	NA
UHGV-0283465_57	PHROG	phrog_22543	NA	unknown function
UHGV-0283465_57	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0283465_59	PHROG	phrog_3136	NA	unknown function
UHGV-0283465_59	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0283465_59	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0283465_59	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0283465_60	PHROG	phrog_38832	NA	unknown function
UHGV-0283465_60	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0283465_60	Structural annotation	PF10781	NA	NA
UHGV-0283465_65	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0283465_65	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0283465_65	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0283465_65	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0283465_65	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0283465_65	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0283465_65	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0283465_66	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0283465_66	PHROG	phrog_200	lipoprotein	other
UHGV-0283465_66	UniRef90	UniRef90_A0A8G1THJ2	Prohibitin family protein	NA
UHGV-0283465_66	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0283465_66	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0283465_66	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0283465_68	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0283465_70	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0283465_70	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0283465_70	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0283465_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0283465_70	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0283465_71	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0283465_71	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0283465_71	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0283465_71	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0283465_71	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0283465_71	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0283465_71	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA