UHGV-0284947

Genome information

Genome length 20,587 bps

CDS count 29

Completeness 58.88% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0284947
vOTU ID	vOTU-031767
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_10002_round14~3218737
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.89
Jumbo phage	No

Genome content
Genome length	20,587 bps
GC content	38.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	95.68%
Average CDS length	682.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0284947_2	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0284947_2	UniRef90	UniRef90_A0A2N8PXI4	ArpU family transcriptional regulator	NA
UHGV-0284947_2	eggNOG-mapper	1158614.I592_02436	NA	NA
UHGV-0284947_2	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-0284947_4	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0284947_4	UniRef90	UniRef90_UPI000C9C4ACF	HNH endonuclease	NA
UHGV-0284947_4	eggNOG-mapper	1497679.EP56_05700	HNH nucleases	NA
UHGV-0284947_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0284947_5	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0284947_5	UniRef90	UniRef90_UPI001D0DE0A6	P27 family phage terminase small subunit	NA
UHGV-0284947_5	eggNOG-mapper	1158604.I591_01771	Phage terminase, small subunit	NA
UHGV-0284947_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0284947_5	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0284947_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0284947_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0284947_6	UniRef90	UniRef90_UPI000C9CAA72	terminase large subunit	NA
UHGV-0284947_6	eggNOG-mapper	1158604.I591_01770	Phage Terminase	NA
UHGV-0284947_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0284947_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0284947_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0284947_6	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0284947_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0284947_8	UniRef90	UniRef90_UPI000C9CD2F5	phage portal protein	NA
UHGV-0284947_8	eggNOG-mapper	1158604.I591_01769	Phage portal protein	NA
UHGV-0284947_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0284947_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0284947_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0284947_8	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0284947_9	KOfam	K06904	NA	NA
UHGV-0284947_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0284947_9	UniRef90	UniRef90_UPI001D0E5118	HK97 family phage prohead protease	NA
UHGV-0284947_9	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0284947_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0284947_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0284947_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0284947_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0284947_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0284947_10	UniRef90	UniRef90_UPI000C9AD64B	phage major capsid protein	NA
UHGV-0284947_10	eggNOG-mapper	1158604.I591_01767	Phage capsid family	NA
UHGV-0284947_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0284947_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0284947_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0284947_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0284947_11	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0284947_11	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-0284947_11	Structural annotation	PF07498	NA	NA
UHGV-0284947_12	PHROG	phrog_2550	NA	unknown function
UHGV-0284947_12	UniRef90	UniRef90_A0A3E3JYI5	Phage gp6-like head-tail connector protein	NA
UHGV-0284947_12	eggNOG-mapper	1232453.BAIF02000028_gene2725	NA	NA
UHGV-0284947_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0284947_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0284947_13	UniRef90	UniRef90_UPI000C9BCAE9	phage head closure protein	NA
UHGV-0284947_13	eggNOG-mapper	1232453.BAIF02000028_gene2726	NA	NA
UHGV-0284947_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0284947_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0284947_14	UniRef90	UniRef90_UPI001748A5D5	HK97 gp10 family phage protein	NA
UHGV-0284947_14	eggNOG-mapper	1497679.EP56_05750	NA	NA
UHGV-0284947_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0284947_15	PHROG	phrog_78	tail terminator	connector
UHGV-0284947_15	eggNOG-mapper	1158604.I591_01762	NA	NA
UHGV-0284947_15	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0284947_16	PHROG	phrog_88	major tail protein	tail
UHGV-0284947_16	UniRef90	UniRef90_UPI000C9B4562	phage tail protein	NA
UHGV-0284947_16	eggNOG-mapper	1158604.I591_01761	phage major tail protein, phi13 family	NA
UHGV-0284947_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0284947_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0284947_17	PHROG	phrog_709	NA	unknown function
UHGV-0284947_17	UniRef90	UniRef90_A0A1E5GU35	Rho_N domain-containing protein	NA
UHGV-0284947_17	eggNOG-mapper	1121105.ATXL01000027_gene752	NA	NA
UHGV-0284947_18	PHROG	phrog_3033	NA	unknown function
UHGV-0284947_18	UniRef90	UniRef90_A0A0D6DWF5	Prophage pi2 protein 41	NA
UHGV-0284947_18	eggNOG-mapper	1158604.I591_01759	NA	NA
UHGV-0284947_19	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0284947_19	UniRef90	UniRef90_UPI000C99A674	phage tail tape measure protein	NA
UHGV-0284947_19	eggNOG-mapper	1158604.I591_01758	Phage tail tape measure protein	NA
UHGV-0284947_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0284947_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0284947_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0284947_20	UniRef90	UniRef90_UPI000C9C975D	phage tail protein	NA
UHGV-0284947_20	eggNOG-mapper	1158604.I591_01757	phage tail	NA
UHGV-0284947_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0284947_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0284947_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0284947_21	UniRef90	UniRef90_UPI000C9CA877	phage tail tip lysozyme	NA
UHGV-0284947_21	eggNOG-mapper	1158602.I590_02576	Prophage endopeptidase tail	NA
UHGV-0284947_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0284947_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0284947_21	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0284947_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0284947_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0284947_21	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0284947_22	PHROG	phrog_11857	NA	unknown function
UHGV-0284947_22	UniRef90	UniRef90_A0A7H4KLL9	Phage minor structural protein	NA
UHGV-0284947_22	eggNOG-mapper	1158607.UAU_01043	Phage minor structural protein	NA
UHGV-0284947_22	Pfam	PF05257	CHAP domain	CHAP
UHGV-0284947_22	COG	COG4926	Phage-related protein	NA
UHGV-0284947_22	Structural annotation	COG3942	NA	NA
UHGV-0284947_23	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0284947_23	UniRef90	UniRef90_A0A7H4KLL8	BppU_N domain-containing protein	NA
UHGV-0284947_23	eggNOG-mapper	1158607.UAU_01044	NA	NA
UHGV-0284947_23	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0284947_23	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0284947_24	PHROG	phrog_9625	NA	unknown function
UHGV-0284947_24	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-0284947_25	PHROG	phrog_6907	NA	unknown function
UHGV-0284947_25	UniRef90	UniRef90_UPI001A8F63C0	collagen-like protein	NA
UHGV-0284947_25	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-0284947_26	PHROG	phrog_7911	tail protein	tail
UHGV-0284947_26	UniRef90	UniRef90_C9BVF1	Predicted protein	NA
UHGV-0284947_26	eggNOG-mapper	1158601.I585_04169	NA	NA
UHGV-0284947_26	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0284947_27	PHROG	phrog_1536	NA	unknown function
UHGV-0284947_27	eggNOG-mapper	1158607.UAU_01048	NA	NA
UHGV-0284947_28	PHROG	phrog_134	NA	unknown function
UHGV-0284947_28	UniRef90	UniRef90_A0A345FSS3	XkdX family protein	NA
UHGV-0284947_28	eggNOG-mapper	1158607.UAU_01049	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0284947_28	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0284947_28	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0284947_28	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0284947_29	PHROG	phrog_199	holin	lysis
UHGV-0284947_29	UniRef90	UniRef90_A0A7H4KLL2	Holin	NA
UHGV-0284947_29	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0284947_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0284947_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA