UHGV-0286359

Genome information

Genome length 32,469 bps

CDS count 43

Completeness 100.00% (complete)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0286359
vOTU ID	vOTU-050073
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR634988_119_28302_round347~1287597
BioSample	SAMEA2466908
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.53
Jumbo phage	No

Genome content
Genome length	32,469 bps
GC content	30.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	76.36%
Average CDS length	577.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0286359_1	PHROG	phrog_24267	NA	unknown function
UHGV-0286359_1	eggNOG-mapper	1280689.AUJC01000003_gene979	NA	NA
UHGV-0286359_1	Structural annotation	PF05895	NA	NA
UHGV-0286359_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0286359_3	PHROG	phrog_435	endolysin	lysis
UHGV-0286359_3	UniRef90	UniRef90_A0A1H0M9G7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0286359_3	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0286359_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0286359_3	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0286359_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0286359_3	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0286359_6	UniRef90	UniRef90_UPI001C9A6330	recombinase family protein	NA
UHGV-0286359_6	eggNOG-mapper	1278311.AUAL01000011_gene747	Resolvase, N terminal domain	NA
UHGV-0286359_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0286359_7	PHROG	phrog_585	NA	unknown function
UHGV-0286359_7	UniRef90	UniRef90_UPI0014597942	NA	NA
UHGV-0286359_7	eggNOG-mapper	1262449.CP6013_2263	NA	NA
UHGV-0286359_7	Pfam	PF10711	NA	DUF2513
UHGV-0286359_7	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0286359_8	PHROG	phrog_2727	NA	unknown function
UHGV-0286359_8	UniRef90	UniRef90_UPI001D10857B	integrase	NA
UHGV-0286359_8	eggNOG-mapper	1151292.QEW_0735	NA	NA
UHGV-0286359_12	PHROG	phrog_25531	NA	unknown function
UHGV-0286359_12	eggNOG-mapper	1487923.DP73_10005	Phage plasmid primase P4 family	NA
UHGV-0286359_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0286359_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0286359_13	UniRef90	UniRef90_Q894I3	Phage-related protein	NA
UHGV-0286359_13	eggNOG-mapper	1582152.A0A0A8WHY0_9CAUD	DNA binding	NA
UHGV-0286359_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0286359_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0286359_15	eggNOG-mapper	1280689.AUJC01000007_gene3326	NA	NA
UHGV-0286359_18	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0286359_18	UniRef90	UniRef90_UPI0009BAFD6C	helix-turn-helix domain containing protein	NA
UHGV-0286359_18	eggNOG-mapper	748727.CLJU_c00320	transposase activity	NA
UHGV-0286359_18	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0286359_18	Structural annotation	PF07141	NA	NA
UHGV-0286359_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0286359_19	PHROG	phrog_8711	terminase large subunit	head and packaging
UHGV-0286359_19	UniRef90	UniRef90_A0A2C6BD45	Terminase (Fragment)	NA
UHGV-0286359_19	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0286359_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0286359_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0286359_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0286359_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0286359_20	UniRef90	UniRef90_UPI001F06E557	PBSX family phage terminase large subunit	NA
UHGV-0286359_20	eggNOG-mapper	268407.PWYN_15645	Terminase RNAseH like domain	NA
UHGV-0286359_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0286359_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0286359_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0286359_20	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0286359_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0286359_21	UniRef90	UniRef90_UPI0013EBE05B	phage portal protein	NA
UHGV-0286359_21	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0286359_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0286359_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0286359_22	UniRef90	UniRef90_A0A4L8C0F8	Phage portal protein, SPP1 family	NA
UHGV-0286359_22	eggNOG-mapper	552398.HMPREF0866_03118	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0286359_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0286359_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0286359_24	eggNOG-mapper	546275.FUSPEROL_02028	Phage Mu protein F like protein	NA
UHGV-0286359_24	COG	COG2369	NA	NA
UHGV-0286359_25	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0286359_25	UniRef90	UniRef90_UPI00040E1B84	minor capsid protein	NA
UHGV-0286359_25	eggNOG-mapper	1280689.AUJC01000007_gene3319	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0286359_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0286359_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0286359_25	COG	COG2369	NA	NA
UHGV-0286359_26	PHROG	phrog_34655	NA	unknown function
UHGV-0286359_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0286359_27	UniRef90	UniRef90_UPI0006899DE0	NA	NA
UHGV-0286359_27	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0286359_27	Pfam	PF14265	NA	DUF4355
UHGV-0286359_27	Structural annotation	PF14265	NA	NA
UHGV-0286359_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-0286359_28	UniRef90	UniRef90_I7ILV4	Phage coat protein gp6	NA
UHGV-0286359_28	eggNOG-mapper	1445809.A0A0A7AQF5_9CAUD	viral capsid	NA
UHGV-0286359_28	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0286359_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0286359_29	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0286359_29	UniRef90	UniRef90_UPI001CD437DE	phage head-tail connector protein	NA
UHGV-0286359_29	eggNOG-mapper	1280689.AUJC01000007_gene3315	Phage gp6-like head-tail connector protein	NA
UHGV-0286359_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0286359_30	eggNOG-mapper	1499683.CCFF01000017_gene2929	NA	NA
UHGV-0286359_30	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0286359_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0286359_31	UniRef90	UniRef90_UPI0006C21968	HK97 gp10 family phage protein	NA
UHGV-0286359_31	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0286359_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0286359_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0286359_31	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0286359_32	PHROG	phrog_78	tail terminator	connector
UHGV-0286359_32	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0286359_33	PHROG	phrog_158	major tail protein	tail
UHGV-0286359_33	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-0286359_33	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0286359_33	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0286359_33	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0286359_34	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0286359_34	UniRef90	UniRef90_UPI0005AA54D3	NA	NA
UHGV-0286359_34	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-0286359_34	Pfam	PF19591	NA	DUF6096
UHGV-0286359_34	Structural annotation	PF19591	NA	NA
UHGV-0286359_35	PHROG	phrog_2066	NA	unknown function
UHGV-0286359_35	eggNOG-mapper	1499683.CCFF01000017_gene2924	NA	NA
UHGV-0286359_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0286359_37	UniRef90	UniRef90_A0A1M6MXK4	Phage-related protein	NA
UHGV-0286359_37	eggNOG-mapper	1499683.CCFF01000017_gene2923	phage tail tape measure protein	NA
UHGV-0286359_37	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0286359_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0286359_38	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0286359_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0286359_39	PHROG	phrog_1194	NA	unknown function
UHGV-0286359_39	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0286359_39	eggNOG-mapper	1280692.AUJL01000025_gene2069	NA	NA
UHGV-0286359_39	Pfam	PF20458	NA	DUF6711
UHGV-0286359_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0286359_40	eggNOG-mapper	1280689.AUJC01000003_gene978	Phage minor structural protein	NA
UHGV-0286359_40	COG	COG4926	Phage-related protein	NA
UHGV-0286359_41	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0286359_41	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0286359_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0286359_41	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0286359_42	eggNOG-mapper	1280689.AUJC01000003_gene979	NA	NA
UHGV-0286359_43	eggNOG-mapper	1280689.AUJC01000007_gene3305	NA	NA